Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq159 170 2e-37 seq3660 100 4e-16 seq1979 96.9 4e-15 >seq159 Length=112901 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 ||||||||||| || || || ||||| || ||||| || ||||||||||| |||||| Sbjct 34593 AAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAA 34652 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | |||||| ||||| | || || | ||| | | |||||||| | ||| |||||| Sbjct 34653 TGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTCT 34712 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || | |||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||| Sbjct 34713 TCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTTT 34772 Query 33225 ATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 33271 || |||||||| ||||| | |||||| || | ||| | |||||| Sbjct 34773 ATAGGAAAAATGACAAAACGATTTGGGTTGTCACGAAGAAGTGGTTC 34819 Score = 136 bits (150), Expect = 5e-27 Identities = 165/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || || || | ||| ||| || || || || ||||| | || | || | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGT---CATGTATCCACTTTTGAGCCCAATCGG 32859 |||||| ||||||| || | | ||| | | ||| ||||| | |||||| || | Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAG 33961 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 |||| || |||||||||||||| || || || ||||| |||||| Sbjct 33962 CCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGA 34005 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||| ||| Sbjct 32998 GACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCT 33057 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATT 32449 || || ||||| | |||||||| || ||||| || Sbjct 33058 TCCAAAGATATGTGCTCCATGAAGTCAAATGGGTT 33092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || |||||||| || |||||||||||||| || ||||| ||||| |||||||| |||||| Sbjct 34339 CTGTACATTTCAGAGTGAATGTTTTCAATTGCAATTTGGAATCCATAGAAGCACCTAGCC 34398 Query 33009 TCGGTAATCTGTA-CTTCTGTACAAAATCGTTCT-GCTAAAT 33048 || || ||||| | || ||| ||||| || ||| |||||| Sbjct 34399 TCTGTGATCTGGACCTCCTGGGCAAAA-CGCTCTACCTAAAT 34439 >seq3660 Length=165149 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| | |||||||||||||||||||||| || || ||||| ||||| || Sbjct 79202 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGATTGCTCTTCCTG 79143 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 79142 TTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGGACTCTATTATG 79083 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 79082 GCATACCA 79075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| |||||| || || |||||||| || || || || || || || || |||| Sbjct 75436 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTGGCAGCAAGAA 75377 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || |||||||| | || || |||||| |||||| Sbjct 75376 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCTGCAGTCTCAGCAGCCAGATTGTCCA 75317 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 |||||| || || || ||| || | ||| ||| ||||||| || Sbjct 75316 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 75269 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||| | | ||||||||||| || | || ||| | ||||| || || |||| || Sbjct 81869 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 81810 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| ||||| || || || | || |||||||| || ||||| | ||||| ||| Sbjct 81809 TTAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATAATATTCT 81750 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62087 | || | || ||||| | || ||||| |||| | || ||||| ||||||| Sbjct 81749 TCTGGGAGATCTCCCACACTGTCTTATACAACT-GTTTGATATCATCTGGAA 81699 >seq1979 Length=378058 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| | |||||||||||||||||||| | || || ||||| ||||| || Sbjct 363378 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCTG 363319 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 363318 TTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGGACTCTATTATG 363259 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 363258 GCATACCA 363251 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| |||||| || || |||||||| || || || || || || || || |||| Sbjct 359687 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTCGCAGCAAGAA 359628 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || ||||| || | || || |||||| |||||| Sbjct 359627 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCCGCAGTCTCAGCAGCCAGATTGTCCA 359568 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 |||||| || || || ||| || | ||| ||| ||||||| || Sbjct 359567 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 359520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633601664868000