Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq159 183 3e-41 seq635 84.2 2e-11 >seq159 Length=112901 Score = 183 bits (202), Expect = 3e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | |||||||||||| || ||||| || ||||| || ||||||| ||| || Sbjct 34589 TACCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAAT 34648 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGAC 93594 ||||||||| || || || ||||| ||||| | || ||||| |||||||| || Sbjct 34649 AAAATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTAC 34708 Query 93595 TTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATA 93654 |||||| |||||||||| ||||| ||||||||||||||||| | ||| ||||||||||| Sbjct 34709 TTCTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATA 34768 Query 93655 TTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 || || ||||| |||||||||||||| ||||| || Sbjct 34769 TTTTATAGGAAAAATGACAAAACGATTTGGGTTGTC 34804 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||||||||||| | ||||| | | |||| ||||||||||||||| || |||||| Sbjct 33802 TCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCTTGAGCCAAAAGATGGAAGCA 33861 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||| |||||| || || || |||||||| || ||||| || | || | || ||||| Sbjct 33862 AAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAGCAATAACTCTCTCTGCAAAG 33921 Query 93254 TTTGCGGAATTACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 | || | || || ||||||| || |||||| || || |||||||| | ||||| Sbjct 33922 CTGGC--ATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAGCCTTTTTCTTTACACAAG 33979 Query 93312 GTAGTGTTTCGATAGCGTTAAATAG 93336 | | ||||| || || || || || Sbjct 33980 GCATAGTTTCAATTGCATTGAAGAG 34004 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||||||||| || | || || ||||||||||||||||| ||||| || ||||| || Sbjct 34342 TACATTTCAGAGTGAATGTTTTCAATTGCAATTTGGAATCCATAGAAGCACCTAGCCTCT 34401 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 |||||||| || || || | ||| | |||||| Sbjct 34402 GTGATCTGGACCTCCTGGGCAAAACGCTCTAC 34433 >seq635 Length=505256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 162752 CCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGATGCTCTAACCACTGA 162811 || || |||||||||||||||||||| || || || |||||| ||||||||||||||| Sbjct 72188 CCCCTAGTGAGAATCGAACTCACGACCACTGGTTTACAAGACCAGTGCTCTAACCACTGA 72247 Query 162812 GCTAAAGAGGC 162822 |||| |||||| Sbjct 72248 GCTATAGAGGC 72258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556834140289200