Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq304 89.7 4e-13 seq3215 82.4 6e-11 >seq304 Length=94255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| || || |||| || || ||||||||| | || || || Sbjct 597 AACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCA 538 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | ||| | || || || ||| |||||||| || | || || Sbjct 537 TCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGAC 478 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | || |||| ||| || ||||| |||||||| || || || || Sbjct 477 CAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGTGACTAC 418 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||||||||| || ||||| |||||||||||||| ||||||| Sbjct 417 AACATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGCA 366 >seq3215 Length=281622 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||||||||| | || ||||| ||||| ||| |||| || ||| Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || || || |||||||||||| ||||| ||||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | || | ||| || || || ||||||||| | || || ||| || || Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 219992 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || ||||| || || || ||| | ||| ||||||| || |||||| Sbjct 219991 ATTCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGTCTCCGTGGTGGC 219944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423020253286000