Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3215 145 6e-30 seq304 140 3e-28 >seq3215 Length=281622 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| || ||||| || || || || | || ||||| || || | Sbjct 223245 AACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCA 223186 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || ||||||||||| ||||| || ||||| || Sbjct 223185 TCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGAC 223126 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || ||||| || |||||| | || ||| ||||||| | || ||| Sbjct 223125 CAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGAGTGACTAC 223066 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| |||||||||||| | ||||| || ||||| Sbjct 223065 AACATTCAGAAAGAATCCACCCTTCATTTGGTGTTGCG 223028 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || |||| || || || || || | Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || |||||||| || || ||||| || ||||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| || ||| |||||| | ||| |||||| Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 219992 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| ||||| | ||| | || |||| Sbjct 219991 ATTCAGAAAGAGTCCACTCTCCATCTTGTGCTGCG 219957 >seq304 Length=94255 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| || ||||| || || || || | || ||||| || || | Sbjct 597 AACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCA 538 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || ||||||||||| ||||| || ||||| || Sbjct 537 TCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGAC 478 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || ||||| || |||||| | || ||| |||||| | || ||| Sbjct 477 CAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGTGACTAC 418 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| |||||||| ||| | ||||| || ||||| |||| || || Sbjct 417 AACATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGG 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419708407883950