Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3154 100 6e-16 seq3454 95.1 2e-14 seq3798 93.3 9e-14 seq1502 93.3 9e-14 seq714 93.3 9e-14 seq3641 91.5 3e-13 seq3581 91.5 3e-13 seq3309 91.5 3e-13 seq1613 91.5 3e-13 seq1313 91.5 3e-13 seq381 91.5 3e-13 seq146 91.5 3e-13 seq1114 89.7 1e-12 >seq3154 Length=830492 Score = 100 bits (110), Expect = 6e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||||| |||||| | ||||| ||||| || ||| | |||||| ||| || || Sbjct 139813 TTGAAGCGTAACCTGCAGAAGGAAATCAAGGTGGCCCAGCTAGCTGGTTCTGTCTCTGAG 139872 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 || |||| ||| ||||| |||||| | | || ||| |||| | | |||| ||| Sbjct 139873 ATGTCTGCCTATCATCATGGTGAGATGTCTTTGATGGGCACCATCATCAACTTGGCCCAG 139932 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||| ||| || || ||||| | ||| |||||| |||| |||||||||||| ||||| Sbjct 139933 AACTTTGTAGGTAGCAACAATCTCAACCTGCTGCAGCCCATTGGTCAGTTTGGTACTCGT 139992 Query 218809 CTATTGGGTGGAAAGGAT 218826 || || || |||||| Sbjct 139993 CTCCATGGAGGCAAGGAT 140010 >seq3454 Length=682676 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 620929 ATAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCG 620870 Query 142561 AGCCCCACATCGGGC 142575 |||||||||| |||| Sbjct 620869 AGCCCCACATTGGGC 620855 >seq3798 Length=601964 Score = 93.3 bits (102), Expect = 9e-14 Identities = 77/93 (83%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 195274 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 195333 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595 |||||||| |||| ||| | | | ||||||| Sbjct 195334 CCCCACATTGGGC-GAATTTGTTGCTTTTTGAT 195365 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 191284 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 191343 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 191344 CCCCACATTGGGC 191356 Score = 87.8 bits (96), Expect = 4e-12 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 200420 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 200479 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595 |||||||| ||| ||| | | | ||||||| Sbjct 200480 CCCCACATTAGGC-GAATTTGTTGCTTTTTGAT 200511 >seq1502 Length=414659 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 220829 TAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 220888 Query 142562 GCCCCACATCGGGC 142575 ||||||||| |||| Sbjct 220889 GCCCCACATTGGGC 220902 >seq714 Length=55228 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 53840 TAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 53781 Query 142562 GCCCCACATCGGGC 142575 ||||||||| |||| Sbjct 53780 GCCCCACATTGGGC 53767 >seq3641 Length=169372 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 163228 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 163169 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 163168 CCCCACATTGGGC 163156 >seq3581 Length=179731 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 39482 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 39541 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 39542 CCCCACATTGGGC 39554 >seq3309 Length=250958 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 226189 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 226248 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 226249 CCCCACATTGGGC 226261 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 228167 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 228226 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 228227 CCCCACATTGGGC 228239 >seq1613 Length=405662 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 283504 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 283445 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 283444 CCCCACATTGGGC 283432 >seq1313 Length=429996 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 98244 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 98303 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 98304 CCCCACATTGGGC 98316 >seq381 Length=85735 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 14064 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 14123 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 14124 CCCCACATTGGGC 14136 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct 13171 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCCTGGGTTCGAG 13230 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 13231 CCCCACATTGGGC 13243 >seq146 Length=115361 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 50312 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 50371 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 50372 CCCCACATTGGGC 50384 >seq1114 Length=448055 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 98201 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 98260 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 98261 CCCACATTGGGC 98272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027786362121030