Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3215 143 5e-29 seq304 134 3e-26 >seq3215 Length=281622 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || ||||||||||| || ||||| || ||| Sbjct 219945 CCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTC 220004 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| ||||||||||| || || || | | || || || || ||| Sbjct 220005 AAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 220064 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| ||||| || || ||||| |||| | ||||| Sbjct 220065 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACC 220124 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||| || ||||| || |||||||| Sbjct 220125 TCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || || ||||| ||||| || ||||| || || Sbjct 223016 CCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTC 223075 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || || | ||||||||| ||||| Sbjct 223076 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 223135 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||||||||| ||||| || || ||||| |||| || ||||| Sbjct 223136 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 223195 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || | ||||| || || |||||||| Sbjct 223196 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 >seq304 Length=94255 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || || || || ||||| || ||||| || || Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || || | ||||||||| ||||| Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||||||||| ||||| || || ||||| |||| || ||||| Sbjct 488 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 547 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || | ||||| || || |||||||| Sbjct 548 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921578277327600