Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1979 100 5e-16 seq3660 96.9 7e-15 seq159 96.9 7e-15 >seq1979 Length=378058 Score = 100 bits (110), Expect = 5e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||| || || |||||||||||||| | ||| | || |||| | |||||| ||| Sbjct 362882 CATGAACAGATCTGGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCTT 362823 Query 245071 GCCAGTGTTCTTCCT-CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGT 245129 |||||||||||| | ||| |||| |||||||||| |||| |||||||| |||| || Sbjct 362822 TCCAGTGTTCTTCTTGCAG-TCCAGGAAGTCAAAGATGTCGTTATGCCAGGGTTCCAGGT 362764 Query 245130 AGACAGCGAGGGCGCCGGGCCGCT 245153 ||| || | ||| || || |||| Sbjct 362763 AGATGGCAAAGGCTCCAGGACGCT 362740 Score = 100 bits (110), Expect = 5e-16 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | | ||||||| |||||||| ||||| | |||||| ||||||||||| Sbjct 363406 CACCTCATCAGGGCTTGTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGT 363347 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGG 244820 ||||||| ||| |||||| ||| ||| || | ||||||||| |||||| |||| Sbjct 363346 TCCCAGGTTCTGCTGATTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGG 363290 >seq3660 Length=165149 Score = 96.9 bits (106), Expect = 7e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | | ||||||| |||||||| ||||| | |||||| ||||||||||| Sbjct 79230 CACCTCATCAGGGCTTGTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGT 79171 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGC 244822 || |||| ||| |||||| ||| ||| || | ||||||||| |||||| | ||| Sbjct 79170 TCCTAGGTTCTGCTGATTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGC 79113 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||| || || |||||||||||||| | ||| | || |||| | |||||| ||| Sbjct 78686 CATGAACAGATCTGGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCTT 78627 Query 245071 GCCAGTGTTCTTCCT-CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGT 245129 |||||||||||| | ||| |||| |||||||||| ||| |||||||| |||| || Sbjct 78626 TCCAGTGTTCTTCTTGCAG-TCCAGGAAGTCAAAGATGTCATTATGCCAGGGTTCCAGGT 78568 Query 245130 AGACAGCGAGGGCGCCGGGCCGCT 245153 ||| || | ||| || || |||| Sbjct 78567 AGATGGCAAAGGCTCCAGGACGCT 78544 >seq159 Length=112901 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || || || ||||| || | ||||| ||||| |||||||| | | Sbjct 34004 CTCTTCAATGCAATTGAAACTATGCCTTGTGTAAAGAAAAAGGCTGACTGGGCTATACGC 33945 Query 42669 TGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||| | | || | || | || | ||||| | | || ||| | || || Sbjct 33944 TGGATCAA---TGCCAAAAATGCCAGCTTTGCAGAGAGAGTTATTGCTTTTGCTGCAGTG 33888 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTC 42784 || || ||||||||||| || | || || |||||||| ||||||||| | | |||| || Sbjct 33887 GAAGGGATCTTCTTCTCTGGTTCTTTTGCTTCCATCTTTTGGCTCAAGAAAAGAGGTATC 33828 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| || || || ||| || ||||| ||||||||||| |||| Sbjct 33827 -ATGCCAGGCCTGACATTCAGCAATGAACTTATCAGCAGGGATGAGG 33782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944293989760800