Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1076 87.8 2e-12 seq924 84.2 2e-11 >seq1076 Length=35256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTT----GAAAGCTC 20667 ||||| |||||||||||||||| |||||| || | | ||||||| || | ||| Sbjct 23505 AGGAAGTCCCTGGAGCCATTTTGGTCCCAAATGTGAA----TGTTCTTATCAGATAACTC 23560 Query 20668 CCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAA 20727 | | | |||||||| |||| ||||||||| | |||| |||| || |||||||| Sbjct 23561 TTTCGCATTTGTACTCCCTTTCACAAACCAAAGTAATTCTTCAGCTACTCCACGCCAAAA 23620 Query 20728 CACCCGCTTTGTGGTTAGTAAGGGAAA 20754 ||||||||| || || || | ||||| Sbjct 23621 CACCCGCTTAGTAGTGAGGAGAGGAAA 23647 >seq924 Length=471628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTT----GAAAGCTC 20667 ||||| |||||||||||||||| |||||| || | | ||||||| || | ||| Sbjct 139295 AGGAAGTCCCTGGAGCCATTTTGGTCCCAAATGTGAA----TGTTCTTATCAGACAACTC 139240 Query 20668 CCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAA 20727 | | | |||||||| |||| ||||||||| | |||| |||| || |||||||| Sbjct 139239 TTTCGCATTTGTACTCCCTTTCACAAACCAAAGTAATTCTTCAGCTACTCCACGCCAAAA 139180 Query 20728 CACCCGCTTTGTGGTTAGTAAGGGAAA 20754 ||| ||||| || || || | ||||| Sbjct 139179 CACTCGCTTAGTAGTGAGGAGAGGAAA 139153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441351669277200