Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq578 107 2e-18 seq669 100 3e-16 seq3798 96.9 4e-15 seq3316 95.1 1e-14 seq1535 93.3 5e-14 seq3462 91.5 2e-13 seq2201 91.5 2e-13 seq80 91.5 2e-13 seq3521 89.7 6e-13 seq3276 89.7 6e-13 seq3430 87.8 2e-12 seq3113 86.0 7e-12 >seq578 Length=65378 Score = 107 bits (118), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 7/111 (6%) Strand=Plus/Minus Query 56998 AAAAATTTTCT----CCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||||||| || || | | ||| |||||| ||||||||||||||||||||| Sbjct 51486 AAAAATTTTCTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 51427 Query 57054 ATACTCACCACTATACTACCGAGGATTGAATATATAACTT---GAATATTG 57101 |||||||||||||||||| |||||||||| | || ||||| |||||||| Sbjct 51426 ATACTCACCACTATACTATCGAGGATTGACTGTAGAACTTACAGAATATTG 51376 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 56999 AAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||||| ||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 50455 AAAGTTTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 50396 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 |||||||||||||| |||||||||| Sbjct 50395 TCACCACTATACTATCGAGGATTGA 50371 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47077 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47018 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 47017 TACTATCGAGGATTG 47003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| |||||| |||||| Sbjct 45965 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACTA 45906 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 45905 TACTATCGAGGAATGA 45890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| |||||| |||||||||||||| ||||||||||||| Sbjct 52631 CTCCCCGACGGGGAATTGAACCCCGGTCTCTCGCGTGACAGGCGGGGATACTCACCACTA 52572 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 52571 TACTATCGAGGATTG 52557 >seq669 Length=503207 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 210374 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 210315 Query 57067 TACTACCGAGGATTGAAT 57084 ||||| |||||||||||| Sbjct 210314 TACTATCGAGGATTGAAT 210297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||| || |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 216630 AAAAATATTACCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 216571 Query 57055 TACTCACCACTATACTACCGAGGATTGA 57082 ||||||||||||||||| |||||| ||| Sbjct 216570 TACTCACCACTATACTATCGAGGACTGA 216543 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 211422 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 211363 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||||||| Sbjct 211362 TACTATCGAGGATTGA 211347 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| | |||||||| Sbjct 217671 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCA 217612 Query 57064 CTATACTACCGAGGATTGAATATATAACT---TGAATATTG 57101 |||||||| ||||||||| | || |||| |||||||| Sbjct 217611 CTATACTATCGAGGATTGGCTGTAGAACTCACAGAATATTG 217571 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 218853 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 218794 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 218793 TACTATCGAGGATTG 218779 >seq3798 Length=601964 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 440364 AAAAACTATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 440423 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 440424 TCACCACTATACTATCGAGGA 440444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 446504 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 446563 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 446564 ATACTATCGAGGA 446576 >seq3316 Length=247066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| || |||| || | | ||| |||||| ||||||||||||||||||||| || Sbjct 107092 AAAAATATTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 107151 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 |||||||||||||||| ||||||||| Sbjct 107152 ACTCACCACTATACTATCGAGGATTG 107177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| |||||||||||||||||||||| ||||||||||||| Sbjct 124913 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGAGATACTCACCACTA 124854 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 124853 TACTATCGAGGATTG 124839 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 109370 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 109429 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 109430 TACTATCGAGGATTG 109444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 110099 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 110158 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 110159 TACTATCGAGGATTG 110173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 111149 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 111208 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 111209 TACTATCGAGGATTG 111223 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 106702 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 106761 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 106762 TACTATCGAGGATT 106775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 108242 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 108301 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 108302 TACTATCGAGGAT 108314 >seq1535 Length=413460 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| |||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 240171 AAAAATTTCTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 240230 Query 57055 TACTCACCACTATACTACCGAGGATTG 57081 ||||||||||||||||| ||||||||| Sbjct 240231 TACTCACCACTATACTATCGAGGATTG 240257 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 234933 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 234992 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 234993 TACTATCGAGGATTG 235007 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 233519 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 233578 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 233579 TACTATCGAGGACTG 233593 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 238793 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 238852 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 238853 TACTATCGAGGACTG 238867 >seq3462 Length=206785 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| |||||| |||||| Sbjct 24127 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACTA 24068 Query 57067 TACTACCGAGGATTGAATAT 57086 ||||| |||||| ||||||| Sbjct 24067 TACTATCGAGGACTGAATAT 24048 >seq2201 Length=361587 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| |||||| |||||| Sbjct 226082 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACTA 226141 Query 57067 TACTACCGAGGATTGAATAT 57086 ||||| |||||| ||||||| Sbjct 226142 TACTATCGAGGACTGAATAT 226161 >seq80 Length=582438 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 340611 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 340552 Query 57067 TACTACCGAGGA----TTGAATATATAACTTGAATA 57098 ||||| |||||| ||| | |||| | |||||| Sbjct 340551 TACTATCGAGGACTGGTTGCAAATATTATGTGAATA 340516 >seq3521 Length=659678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 241531 AAAAATCACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 241590 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||||| ||||||| Sbjct 241591 TCACCACTATACTATCGAGGAT 241612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 240301 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 240360 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 240361 TACTATCGAGGAT 240373 >seq3276 Length=1305080 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || |||| |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 264361 AAGAATTGCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 264302 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||| |||||| || Sbjct 264301 TTACCACTATACTATCGAGGACTG 264278 >seq3430 Length=213773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 3524 AAAAATTTCGACCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3583 Query 57055 TACTCACCACTATACTACCGAGGATTG 57081 |||| |||||||||||| |||||| || Sbjct 3584 TACTTACCACTATACTATCGAGGACTG 3610 >seq3113 Length=310813 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 42526 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 42467 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 42466 TACTATCGAGGACTG 42452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543186793687200