Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3215 125 7e-24 seq304 114 1e-20 >seq3215 Length=281622 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||| | ||| | || |||||||| ||||| ||||| |||| | Sbjct 219945 CCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTC 220004 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || ||||| ||||||| ||||||||||| || || Sbjct 220005 AAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 220064 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| ||| || ||| | | ||| | ||| || | ||| || Sbjct 220065 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACC 220124 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || |||||||| ||||| |||||||| Sbjct 220125 TCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| |||||||||||||| | || || ||||| ||||| ||||| || | | Sbjct 223016 CCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTC 223075 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| | |||| || || || || || ||| Sbjct 223076 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 223135 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| || || ||| | | ||| | ||| || | ||| || Sbjct 223136 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 223195 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || |||| ||| || ||||||||||||||| Sbjct 223196 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 223243 >seq304 Length=94255 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||||||| | ||||| ||||| ||||| ||||| || | | Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| | |||| || || || || || ||| Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| || || ||| | | ||| | ||| || | ||| || Sbjct 488 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 547 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || |||| ||| || ||||||||||||||| Sbjct 548 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478035399200