Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3215 141 2e-28 seq304 104 6e-17 >seq3215 Length=281622 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| ||||| |||||||| ||||| || || | ||||||||| ||| || Sbjct 219951 CGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTG 220010 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || ||||| | ||||||||| || || ||| ||| Sbjct 220011 CGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCT 220070 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| |||||| ||| | ||| |||| | ||||| |||| Sbjct 220071 TCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGG 220130 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||||||||| ||||| || || Sbjct 220131 GTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTG 220168 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || || | |||||||||| || || | |||||||||||||| Sbjct 223040 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGCTGT 223099 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || ||||| || ||||| || || || ||| || |||||||| Sbjct 223100 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 223159 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| ||| | ||| |||| || ||||| || | || || ||||| || || Sbjct 223160 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 223219 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||| ||||||||||| || Sbjct 223220 AAAGTCTTCACAAAAATCTG 223239 >seq304 Length=94255 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || || | |||||||||| || || | ||||||||||||||| Sbjct 392 TGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCTTCCAGCTGT 451 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || ||||| || ||||| || || || ||| || |||||||| Sbjct 452 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 511 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| ||| | ||| |||| || ||||| || | || || ||||| || || Sbjct 512 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 571 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||| ||||||||||| || Sbjct 572 AAAGTCTTCACAAAAATCTG 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178863748106610