Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3660 96.9 4e-15 seq1979 96.9 4e-15 >seq3660 Length=165149 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 ||||||||||| ||| ||||| |||||||| || ||| || || || | |||| || Sbjct 79215 TGTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTG 79156 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 || ||||| |||| |||| |||||||| |||||||| ||||| || || || ||||| Sbjct 79155 ATTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTG 79096 Query 106624 TGACTTGAGAATTGCCTTCCACA 106646 |||| | || || | ||||| Sbjct 79095 GGACTCTATTATGGCATACCACA 79073 >seq1979 Length=378058 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 ||||||||||| ||| ||||| |||||||| || ||| || || |||| |||| || Sbjct 363391 TGTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTG 363332 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 || ||||| |||| |||| |||||||| |||||||| || || || || || ||||| Sbjct 363331 ATTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTG 363272 Query 106624 TGACTTGAGAATTGCCTTCCACA 106646 |||| | || || | ||||| Sbjct 363271 GGACTCTATTATGGCATACCACA 363249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589952554669200