Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3215 141 2e-28 seq304 136 9e-27 >seq3215 Length=281622 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTTC 194990 ||||| || |||||||||||||| ||||| ||||| ||| |||| || | |||||||| Sbjct 219963 ACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAG-GTGCGACCATCTTC 220021 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || ||||| | || || || ||||| |||||||||||||||||||| Sbjct 220022 CAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTG 220081 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || |||||||| || || || || || ||||| | ||||| Sbjct 220082 GATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTCTT 220141 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||| || || | ||||| Sbjct 220142 GCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| ||||| ||||| ||||| || || || | |||||||| ||||| Sbjct 223040 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGCTGT 223099 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || || ||||||||||| || || || || |||||||||||||| || Sbjct 223100 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 223159 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || |||||||| || || || || |||||||||| ||||| || ||| Sbjct 223160 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 223219 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | ||||| Sbjct 223220 AAAGTCTTCACAAAAATCTGCAT 223242 >seq304 Length=94255 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || ||||| ||||| ||||| || || || | |||||||| ||||| Sbjct 392 TGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCTTCCAGCTGT 451 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || || ||||||||||| || || || || |||||||||||||| || Sbjct 452 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 511 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || |||||||| || || || || |||||||||| ||||| || ||| Sbjct 512 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 571 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | ||||| Sbjct 572 AAAGTCTTCACAAAAATCTGCAT 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109427155657610