Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3215 114 8e-21 seq304 114 8e-21 >seq3215 Length=281622 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| ||| ||||||||||||||| ||||| ||| | || |||| Sbjct 223030 CAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATC 223089 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| || ||||| || || ||||| ||||| | || | |||||| ||||| Sbjct 223090 TTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTC 223149 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || | | || | || | ||| || || | ||| ||||| Sbjct 223150 TTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGT 223209 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || | |||||||||||| |||||||| || Sbjct 223210 CTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 223245 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||||| ||||| | |||| | || |||| |||| ||| || || ||||| Sbjct 219981 TCTTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTCCCAGCAAA 220039 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||| ||| | || | || || ||||| ||||| || || Sbjct 220040 GATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATT 220099 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || ||| || || | ||| ||||| || || |||||||| || || Sbjct 220100 TTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGAC 220159 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 220160 AAAGATCTGCATA 220172 >seq304 Length=94255 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| || ||||||||||||||| ||||| ||| | ||| |||| Sbjct 382 CAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATC 441 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| || ||||| || || ||||| ||||| | || | |||||| ||||| Sbjct 442 TTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTC 501 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || | | || | || | ||| || || | ||| ||||| Sbjct 502 TTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGT 561 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || | |||||||||||| |||||||| || Sbjct 562 CTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324618446712240