Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq159 179 4e-40 seq3660 120 3e-22 seq1979 120 3e-22 >seq159 Length=112901 Score = 179 bits (198), Expect = 4e-40 Identities = 181/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || || ||||||||||| ||||| || || |||||||| |||| Sbjct 34590 ACCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATA 34649 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCAT--TAATATCTTTAGATAAATCTA 19462 ||||||||||| |||| | || | | ||| | | ||| |||||||| | ||||| Sbjct 34650 AAATGTTTTTCCTCTG-GCTTCAGCTTCTCCCAGTGTCCTAAG-TCTTTAGAAAGATCTA 34707 Query 19463 CTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGAT 19522 |||||||| | ||||||||||| |||||||||||||| ||||| ||||| || || ||| Sbjct 34708 CTTCTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGAT 34767 Query 19523 ATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| ||||||||| || ||||| | |||| || || ||||| ||||| Sbjct 34768 ATTTTATAGGAAAAATGACAAAACGATTTGGGTTGTCACGAAGAAGTGGTTC 34819 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||||||||| |||||||| |||||| |||||||| || || |||||||| || Sbjct 33000 CATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCTTC 33059 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATT 18758 || ||||| ||||| || |||||||| |||| |||||| Sbjct 33060 CAAAGATATGTGCTCCATGAAGTCAAATGGGTTTTCTACATT 33101 >seq3660 Length=165149 Score = 120 bits (132), Expect = 3e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 ||||| || ||||||||||||| || || || ||| |||| || | ||| || | || Sbjct 81869 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 81810 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| |||||||| |||||| ||||||| || ||||||||||| | | |||| | Sbjct 81809 TTAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATAATATTCT 81750 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| ||||| ||||| | ||||| || || ||||| Sbjct 81749 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGG 81701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||||||||| || || || | | || | || || || ||||| ||||| || Sbjct 81176 TGGAATTCTCCAGAGAGCACCCTTCTTGTGTAGAGGTTGCTGGTGTATGGCTCTATGGAC 81117 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||| || |||| ||||| || || || ||||| ||||||| || | || | ||| Sbjct 81116 TCATTGTTACCAAGGATTTGTGCTGTAGAAGCTGTGGGCATGGGGGCCAGCAACAGGCTG 81057 Query 47448 TTTCTTACTCCATAT 47462 || |||||||||||| Sbjct 81056 TTCCTTACTCCATAT 81042 >seq1979 Length=378058 Score = 120 bits (132), Expect = 3e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 ||||| || ||||||||||||| || || || ||| |||| || | ||| || | || Sbjct 366297 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 366238 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 ||||||| |||||||| |||||| ||||||| || ||||||||||| | | ||| | Sbjct 366237 TAAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATTATATTCT 366178 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| ||||| ||||| | ||||| || || ||||| Sbjct 366177 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGG 366129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562081889041200