Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq159 96.9 6e-15 seq1979 95.1 2e-14 seq3660 89.7 1e-12 >seq159 Length=112901 Score = 96.9 bits (106), Expect = 6e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| |||||| || | ||| ||| || || ||||||| || || | ||| Sbjct 33784 TCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCTTG 33843 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 ||||| || || | || ||||| |||||||||||||| || |||||||| || || || Sbjct 33844 AGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAGCA 33903 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | | |||||| | || || || ||| | ||||||| | |||||||| ||| Sbjct 33904 ATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAGCC 33963 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || ||||| | || ||||| || || || || |||||| Sbjct 33964 TTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAG 34004 >seq1979 Length=378058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || |||||||||||||| ||| | ||| ||||| ||||| ||| Sbjct 365315 CTGGAATTCTCCAGAGAGCACCCTCCTTGTGTAGAGGTTGCTGGTGTATGGCTCTATGGA 365256 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| || || || ||||| || |||||||||||||| |||| || || || Sbjct 365255 CTCATTGTTACCAAGGATTTGTGCTGTAGAAGCTGTGGGCATGGGGGCCAGCAACAGGCT 365196 Query 213038 GTTCCTCACTCC 213049 |||||| ||||| Sbjct 365195 GTTCCTGACTCC 365184 >seq3660 Length=165149 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| || ||| | ||| ||||| ||||| ||| Sbjct 81177 CTGGAATTCTCCAGAGAGCACCCTTCTTGTGTAGAGGTTGCTGGTGTATGGCTCTATGGA 81118 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| || || || ||||| || |||||||||||||| |||| || || || Sbjct 81117 CTCATTGTTACCAAGGATTTGTGCTGTAGAAGCTGTGGGCATGGGGGCCAGCAACAGGCT 81058 Query 213038 GTTCCTCACTCC 213049 |||||| ||||| Sbjct 81057 GTTCCTTACTCC 81046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931488202867200