Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3660 87.8 3e-12 seq1979 84.2 4e-11 seq159 84.2 4e-11 >seq3660 Length=165149 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 221979 CCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCT 222038 |||| || |||||| |||||||||||| |||| || || | || || | | Sbjct 78747 CCAGACCAGGACACTCATTGGGACACATCAGCGTCCACTGTCCATTCTGTTCCACACGTT 78688 Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098 |||||| || || |||||||| || || | || | |||||||| |||||||| ||| Sbjct 78687 TCATGAACAGATCTGGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCT 78628 Query 222099 CGCCGTTGTTTTTCCT-CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 || |||| ||| | ||| |||| || ||||| |||||| ||||| || ||||| Sbjct 78627 TTCCAGTGTTCTTCTTGCAG-TCCAGGAAGTCAAAGATGTCATTATGCCAGGGTTCCAGG 78569 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| ||| | || || || |||| Sbjct 78568 TAGATGGCAAAGGCTCCAGGACGCT 78544 >seq1979 Length=378058 Score = 84.2 bits (92), Expect = 4e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 221979 CCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCT 222038 |||| || |||||| |||||||||||| |||| || || | || || | | Sbjct 362943 CCAGACCAGGACACTCATTGGGACACATCAGCGTCCACTGTCCATTCTGTTCCACACGTT 362884 Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098 |||||| || || |||||||| || || | || | |||||||| |||||||| ||| Sbjct 362883 TCATGAACAGATCTGGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCT 362824 Query 222099 CGCCGTTGTTTTTCCT-CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 || |||| ||| | ||| |||| || ||||| ||||| ||||| || ||||| Sbjct 362823 TTCCAGTGTTCTTCTTGCAG-TCCAGGAAGTCAAAGATGTCGTTATGCCAGGGTTCCAGG 362765 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| ||| | || || || |||| Sbjct 362764 TAGATGGCAAAGGCTCCAGGACGCT 362740 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| ||||| |||||||||||||| ||| ||||| ||| | || || ||| Sbjct 365317 ACCTGGAATTCTCCAGAGAGCACCCTCCTTGTGTAGAGGTTGCTGGTGTATGGCTCTATG 365258 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| ||||| || ||||| || || || || ||||||||||| |||| || ||| Sbjct 365257 GACTCATTGTTACCAAGGATTTGTGCTGTAGAAGCTGTGGGCATGGGGGCCAGCAACAGG 365198 Query 221243 CTGTTGCGCAGTCCGAATCTA 221263 ||||| | | ||| ||||| Sbjct 365197 CTGTTCCTGACTCCATATCTA 365177 >seq159 Length=112901 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || |||||||| ||||| || ||||| ||| ||||| ||||| ||||||| |||||| Sbjct 33902 GCTTTTGCTGCAGTGGAAGGGATCTTCTTCTCTGGTTCTTTTGCTTCCATCTTTTGGCTC 33843 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| | | || | |||||| || ||| || ||| || || ||||||||||| ||| Sbjct 33842 AAGAAAAGAGGTATCATGCCAGGCCTGACATTCAGCAATGAACTTATCAGCAGGGATGAG 33783 Query 26008 G 26008 | Sbjct 33782 G 33782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928800331555200