Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq304 114 2e-20 seq3215 111 3e-19 >seq304 Length=94255 Score = 114 bits (126), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || ||||| | |||| ||||| ||| || || || Sbjct 365 ATGCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCA 424 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | ||| | || |||| ||||||||||||||||| | | |||||||||||| Sbjct 425 CTCAGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGT 484 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| || ||||| ||||| || || || ||||| || |||||||| | ||| Sbjct 485 GGTATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCT 544 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATA 172078 || || || |||||||| || ||||| || || || | || |||||||| || ||| || Sbjct 545 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTTGATTCTA 604 Query 172079 AAA 172081 || Sbjct 605 CAA 607 >seq3215 Length=281622 Score = 111 bits (122), Expect = 3e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||||||||||||||| | | ||||||||||||||||| || ||||| Sbjct 223088 TCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTG 223147 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || ||||| || |||||||| | ||||| || || |||||| Sbjct 223148 TCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATG 223207 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATAAAA 172081 || || ||||| || || || | || |||||||| || ||| || || Sbjct 223208 GTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTTGATTCTAGAA 223255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905092666614000