Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq402 113 1e-19 seq159 95.1 4e-14 >seq402 Length=536460 Score = 113 bits (124), Expect = 1e-19 Identities = 338/513 (66%), Gaps = 23/513 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||||| | || ||| || || | | | || |||| ||||||| Sbjct 337212 CTATCAAAACGTCCAGATCTTAATATTGCAGGATCAAGTGTTTCTACTCTATTTGTTGAA 337153 Query 288910 GCCAATAC-AACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 |||||| || || ||| |||| || ||| |||||||| |||||||| ||||| Sbjct 337152 -CCAATAATAATTATTCCTTCA-TTTGTTTCAAAACCATCCATTTCTGTTAAAAATTGAT 337095 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | | |||||| |||||||||| | ||| | || || | ||||| Sbjct 337094 TTAATGTTTG---------ATCATTTGAAACACTTCCAAAACT---AT---TTCTTTTAC 337050 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 || ||| | ||||||||| |||| ||||| | ||| |||| || || | | ||| | Sbjct 337049 TAGCAAGTGAATCAATTTCATCAACAAAAATAATACATGGAGCATATTTTTTAGCATTAT 336990 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||||||| ||| | | ||||| || | ||| ||| | |||| ||||||| ||| Sbjct 336989 TAAATAATTTTCTAATTCTTGATGCCCCTAAACCTACAAATGTTTCCTCAAATTCTGAAC 336930 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | ||| || |||| ||||||||||| || | || || | || | | ||| | Sbjct 336929 CAGCAACTGAAAAAAATGGAACATTTGCTTCACCAGAAACAGCTTTTGCTAATAATGTTT 336870 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-C 289266 |||| || |||||| || | || || || || || || | |||| || || | | Sbjct 336869 TACCAGTACCAGGTTCACCATACAAAAGTACACCTTTAGGAATCCTTGCACC--CATATC 336812 Query 289267 T-TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | ||||||| | || |||||||| || |||| ||| | ||| |||| | || Sbjct 336811 TATATATTTTTTTGGTTGTTTTAAAAAATCAACAACTTCTAATAATTCTATTTTTTCTTC 336752 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 ||| || |||||||| | ||| | ||||| Sbjct 336751 TTCAATACCAGCTACATCTGTAAACTTTATATT 336719 >seq159 Length=112901 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CA 133128 ||| | ||||| || || || || || | | || || ||| | ||||| |||||| || Sbjct 34795 AATCGTTTTGTCATTTTTCCTATAAAATATCAAGACATCTGGAAAATGTACAAAAAAGCA 34736 Query 133129 GCAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGA 133188 | || | ||||||||| | ||||||||| | || |||||| || |||||||| Sbjct 34735 GAGGCATCT-TTTTGGACTGCTGAAGAAGTAGATCTTTCTAAAGACTTAGGACACTGGGA 34677 Query 133189 AGCCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGA 133247 || | || |||||||||||||||||| ||| | || || || |||||||| | Sbjct 34676 GAAGCTGAAGCCAGAGGAAAAACATTTTATTTCTCATG-TATTGGCCTTCTTTGCTGCTA 34618 Query 133248 GTGATGGTATTGTTCTTGAAAATTT 133272 ||||||| ||||| ||||||||| Sbjct 34617 GTGATGGCATTGTCAATGAAAATTT 34593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471745375150710