Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3262 93.3 5e-13 seq3447 87.8 2e-11 >seq3262 Length=266767 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| | || || || || ||||||| ||| || || || Sbjct 58250 GCTTGGCAAGCTCACCAGGCAGCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGA 58309 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| || || ||| || || | | || || || | | Sbjct 58310 TGGTGGAGCGCTTGTTGTAGTGGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGA 58369 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||| ||| | ||| ||||||| || ||| |||| Sbjct 58370 TGTCATTGACAAAGCTGTTCATGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGT 58429 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | ||||||||||||| Sbjct 58430 GCACCTGTTTCATCACCTTGTAGATG 58455 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| | || || || || ||||||| ||| || || || Sbjct 176116 GCTTGGCAAGCTCACCAGGCAACAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGA 176057 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || || ||| || || | | || || || | | Sbjct 176056 TGGTGGAACGCTTGTTGTAGTGGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGA 175997 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||| ||| | ||| ||||||| || ||| |||| Sbjct 175996 TGTCATTGACAAAGCTGTTCATGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGT 175937 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | ||||||||||||| Sbjct 175936 GCACCTGTTTCATCACCTTGTAGATG 175911 >seq3447 Length=210637 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| | || || || || ||||||| ||| || || || Sbjct 193430 GCTTGGCAAGCTCACCAGGCAGCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGA 193371 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || || ||| || || | | || || || | | Sbjct 193370 TGGTGGAACGCTTGTTGTAGTGGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGA 193311 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||| ||| | ||| ||||||| || ||| |||| Sbjct 193310 TGTCATTGACAAAGCTGTTCATGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGT 193251 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | ||||||||||||| Sbjct 193250 GCACCTGTTTCATCACCTTGTAGATG 193225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106824892264110