Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq304 131 2e-25 seq3215 127 2e-24 seq3660 93.3 4e-14 seq1979 93.3 4e-14 >seq304 Length=94255 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || ||||| || || ||||| |||| | Sbjct 594 ATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGA-GCCATC 536 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || ||||| ||||||||||| || ||||| || || || Sbjct 535 AGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGACCA 476 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| |||| ||||| || ||||||||||| ||| | | | || || || || Sbjct 475 ACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGTGACTACAA 416 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| || ||||| || || || ||||||||||| |||| || ||| Sbjct 415 CATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGC 367 >seq3215 Length=281622 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || ||||| || || ||||| |||| | Sbjct 223242 ATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGA-GCCATC 223184 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || ||||| ||||||||||| || ||||| || || || Sbjct 223183 AGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGACCA 223124 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| |||| ||||| || ||||||||||| ||| | | | || || || || Sbjct 223123 ACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGAGTGACTACAA 223064 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| || ||||| || || || ||||||||||| | || || ||| Sbjct 223063 CATTCAGAAAGAATCCACCCTTCATTTGGTGTTGCGTCTACGTGGTGGC 223015 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || ||||| || | Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||||||||| || || || ||||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| ||||| ||| |||| ||| | | | || || || ||| Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 219992 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || || || || || || | ||| |||| | || || ||| Sbjct 219991 ATTCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGTCTCCGTGGTGGC 219944 >seq3660 Length=165149 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || ||||| || | ||||| |||||||||||||| || |||| || || |||| Sbjct 79213 TGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGAT 79154 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| || | |||||| | || ||||| ||||| || || ||||| ||||| || | Sbjct 79153 TGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGG 79094 Query 139241 TCTCTATAATG 139251 |||||| ||| Sbjct 79093 ACTCTATTATG 79083 >seq1979 Length=378058 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || ||||| || | ||||| |||||||||||||| || || | || || |||| Sbjct 363389 TGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGAT 363330 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| || | |||||| | || ||||| ||||| || |||||||| ||||| || | Sbjct 363329 TGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGG 363270 Query 139241 TCTCTATAATG 139251 |||||| ||| Sbjct 363269 ACTCTATTATG 363259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449876061152400