Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq304 102 7e-17 seq3215 96.9 3e-15 >seq304 Length=94255 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||| | || ||||| || ||||| || ||||| || || || ||||||||| | || Sbjct 603 AGAATCAACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTA 544 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 ||||| ||||| | | | || || |||||| |||||||| || | || Sbjct 543 GAGCCATCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCA 484 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 || |||||| | || |||| ||| |||||||||||||| |||| | || || Sbjct 483 CCTGACCAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGT 424 Query 110444 GATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||||||||| ||||||||||| | || ||||||| | ||||| || || Sbjct 423 GACTACAACATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGG 368 >seq3215 Length=281622 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||| | || ||||| || ||||| || ||||| || || || ||||||||| | || Sbjct 223251 AGAATCAACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTA 223192 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 ||||| ||||| | | | || || |||||| |||||||| || | || Sbjct 223191 GAGCCATCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCA 223132 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 || |||||| | || |||| ||| |||||||||||||| |||| | | || || Sbjct 223131 CCTGACCAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGAGT 223072 Query 110444 GATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||||||||| |||||||| || | || ||||||| Sbjct 223071 GACTACAACATTCAGAAAGAATCCACCCTTCATTTGGTGTT 223031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412822329328190