Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3262 138 2e-26 seq3447 132 8e-25 seq3269 129 9e-24 seq28 129 9e-24 >seq3262 Length=266767 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 58211 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 58270 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| ||| ||||||||| | Sbjct 58271 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTGGAGCGCTTGTTGTAGT 58330 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 58331 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 58390 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | |||||||| Sbjct 58391 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACCTTGT 58450 Query 1485710 A 1485710 | Sbjct 58451 A 58451 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 176155 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 176096 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| ||| |||||||| | Sbjct 176095 ACAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTGGAACGCTTGTTGTAGT 176036 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 176035 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 175976 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | |||||||| Sbjct 175975 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACCTTGT 175916 Query 1485710 A 1485710 | Sbjct 175915 A 175915 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 52736 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 52795 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| ||| ||||||||| | Sbjct 52796 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTGGAGCGCTTGTTGTAGT 52855 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 52856 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 52915 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||| || || ||| ||||||||||| || | ||| |||| Sbjct 52916 TGATGCTCATGGCTTTGCTGGAAATACCGGTGTCAGGGTGCACCTGTTTCATCACTTTGT 52975 Query 1485710 A 1485710 | Sbjct 52976 A 52976 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| | || || || ||| ||| Sbjct 195718 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTAGCAAGCTCACCGGGCA 195777 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| | ||| ||| || ||| ||| |||||||| | Sbjct 195778 GCAAGAGACGGACAGCAGTCTGAACCTCTCGGCTGGTGATGGTGGAACGCTTGTTGTAGT 195837 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 195838 GGGCAAGGCGGGAAGCTTCACCGGCAATACGCTCAAAGATGTCATTGACAAAGCTGTTCA 195897 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | ||| |||| Sbjct 195898 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACTTTGT 195957 Query 1485710 A 1485710 | Sbjct 195958 A 195958 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 204516 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 204575 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| || |||||||| | Sbjct 204576 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTAGAACGCTTGTTGTAGT 204635 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 204636 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 204695 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | ||| |||| Sbjct 204696 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACTTTGT 204755 Query 1485710 A 1485710 | Sbjct 204756 A 204756 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 206472 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 206531 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| || |||||||| | Sbjct 206532 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTAGAACGCTTGTTGTAGT 206591 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 206592 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 206651 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | ||| |||| Sbjct 206652 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACTTTGT 206711 Query 1485710 A 1485710 | Sbjct 206712 A 206712 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 210595 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 210654 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| || |||||||| | Sbjct 210655 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTAGAACGCTTGTTGTAGT 210714 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 210715 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 210774 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | ||| |||| Sbjct 210775 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACTTTGT 210834 Query 1485710 A 1485710 | Sbjct 210835 A 210835 Score = 100 bits (110), Expect = 5e-15 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 48970 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 49029 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| ||| |||||||| | Sbjct 49030 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTGGAACGCTTGTTGTAGT 49089 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 49090 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 49149 Query 1485650 TGATCGACATCGATTTGTTGGAGAT 1485674 |||| ||| | |||| |||| || Sbjct 49150 TGATGCTCATGGCTTTGCTGGAAAT 49174 >seq3447 Length=210637 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 193469 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 193410 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| ||| |||||||| | Sbjct 193409 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTGGAACGCTTGTTGTAGT 193350 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 193349 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 193290 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | |||||||| Sbjct 193289 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACCTTGT 193230 Query 1485710 A 1485710 | Sbjct 193229 A 193229 >seq3269 Length=264893 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 254542 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 254483 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| || |||||||| | Sbjct 254482 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTAGAACGCTTGTTGTAGT 254423 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 254422 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 254363 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | |||||||| Sbjct 254362 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACCTTGT 254303 Query 1485710 A 1485710 | Sbjct 254302 A 254302 >seq28 Length=132660 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||| |||||| |||| || || || ||| Sbjct 118959 TGTACTTGGTGACGGCCTTTGTGCCCTCACTGACAGCGTGCTTGGCAAGCTCACCAGGCA 119018 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||| ||| ||| || ||| || |||||||| | Sbjct 119019 GCAAGAGACGGACAGCAGTCTGGACCTCTCGGCTGGTGATGGTAGAACGCTTGTTGTAGT 119078 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || || | | || || || | ||||| |||||||| ||||| Sbjct 119079 GGGCAAGGCGGGAAGCTTCACCGGCAATACGTTCAAAGATGTCATTGACAAAGCTGTTCA 119138 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||||||||| || | |||||||| Sbjct 119139 TGATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGGTGCACCTGTTTCATCACCTTGT 119198 Query 1485710 A 1485710 | Sbjct 119199 A 119199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915838985431370