Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3215 95.1 8e-15 seq304 91.5 1e-13 >seq3215 Length=281622 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| |||| |||| || ||||||||||| ||||| ||| |||| |||| ||| Sbjct 223034 ACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTCC 223093 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || || || || ||||| ||||| ||||| | || | |||||| ||||| | Sbjct 223094 AGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGA 223153 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || | || | ||| || |||| ||| |||||||| Sbjct 223154 ATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTC 223213 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||||| ||||| ||||||||| Sbjct 223214 CCAGTCAAAGTCTTCACAAAAATCTGCATG 223243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || || || | ||| ||| ||||||||||| ||||| | | |||| |||| Sbjct 219959 CAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCATC 220018 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||||| || ||||| ||| | || | || || ||||| Sbjct 220019 TTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTC 220078 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || | | || | || || ||| || || | ||| ||||| Sbjct 220079 TTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGT 220138 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||| || || |||||||||||||| Sbjct 220139 CTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 >seq304 Length=94255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| |||| ||| || ||||||||||| ||||| ||| |||| |||| ||| Sbjct 386 ACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCTTCC 445 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || || || || ||||| ||||| ||||| | || | |||||| ||||| | Sbjct 446 AGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGA 505 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || | || | ||| || |||| ||| |||||||| Sbjct 506 ATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTC 565 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||||| ||||| ||||||||| Sbjct 566 CCAGTCAAAGTCTTCACAAAAATCTGCATG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325677597270770