Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3215 141 7e-29 seq304 140 2e-28 >seq3215 Length=281622 Score = 141 bits (156), Expect = 7e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||||||| ||||||||||| |||||||| || || | |||||| Sbjct 223027 ACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCC 223086 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| |||||| | |||| | ||| || || || || || |||||||| Sbjct 223087 ATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTT 223146 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || ||| |||| | || || || | ||||| ||||| || | Sbjct 223147 GTCTTG-AATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAA 223205 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || ||||| || || || ||||| |||||||| || Sbjct 223206 TGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 223245 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||||||| | ||| || ||||| ||||| |||||||| || || | ||| ||||||| Sbjct 219956 ACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAA-GGTGCGAC 220014 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || || |||||| | ||||| | |||||||| || ||||| || |||| Sbjct 220015 CATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTT 220074 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || || ||| |||| | || || || | ||||| || || || | Sbjct 220075 TGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGA 220134 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | ||||| ||||| |||||||| Sbjct 220135 TGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 >seq304 Length=94255 Score = 140 bits (154), Expect = 2e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| |||||||||||| || |||||||| |||||||| || || Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| |||||| | |||| | ||| || || || || Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| ||| || | || ||| |||| | || || || | ||||| Sbjct 488 ATCCCCTCTTTGTCTTG-AATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTAC 546 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || || ||||| || || || ||||| |||||||| || Sbjct 547 CTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385201218690030