Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq304 136 4e-27 seq3215 132 5e-26 >seq304 Length=94255 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || ||||||| ||||||||||| || |||||||| || || Sbjct 367 GCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACT 426 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || |||| || | ||||| || |||||||||||| | ||||||||||| || || || | Sbjct 427 CAGGGTGCGTCCA-TCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTG 485 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 |||| || |||||||| ||| || || | | ||| | || |||| || |||| Sbjct 486 GTATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTA 545 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| || | ||||| || ||||| || || || || || ||||| Sbjct 546 CCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 >seq3215 Length=281622 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||| |||||| || ||||||| || |||||||| || |||||||| || || Sbjct 223015 GCCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACT 223074 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||| || |||||||||||| | ||||||||||| || || || || Sbjct 223075 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGG 223134 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||| || |||||||| ||| || || | | ||| | || |||| || ||||| Sbjct 223135 TATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTAC 223194 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || ||||| || || || || || ||||| Sbjct 223195 CTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 ||||| || || | ||||| || | ||| | || || ||||| || |||||||| ||| Sbjct 219942 TGGCCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCG 220001 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 |||| |||| ||||| | || || |||||| |||||| ||| |||||||| || Sbjct 220002 CTCAAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGG 220061 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || |||||||||||||| || || || | | ||| | || |||| ||| ||| Sbjct 220062 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCT 220121 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | || | |||||||| || | ||||| || || || |||||| Sbjct 220122 ACCTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCATA 220172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488520610956000