Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq304 152 1e-31 seq3215 147 4e-30 seq2929 111 3e-19 seq3572 102 2e-16 seq40 84.2 4e-11 >seq304 Length=94255 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||| || || || || |||||||||||||| || || || ||| Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| |||||||| || || | |||||| || || ||| Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||||||||| || || ||||||||||| ||||| || ||||| Sbjct 488 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 547 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 548 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 >seq3215 Length=281622 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || || || || ||||||||||| || || || ||| || | | || Sbjct 223027 ACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCC 223086 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || ||||| |||||||| || || | |||||| || || ||||| || || || Sbjct 223087 ATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTT 223146 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || ||||||||||| ||||| || ||||| || | || || Sbjct 223147 GTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAAT 223206 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| |||||||| Sbjct 223207 GGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | || ||||| || |||||||| || || || || | | | ||| Sbjct 219956 ACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACC 220015 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||||||||| | | || |||||||| || || ||||| || Sbjct 220016 ATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTT 220075 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || ||||||||||| ||||| || ||||| |||| || || Sbjct 220076 GTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGAT 220135 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | || || ||||| |||||||| Sbjct 220136 GGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 >seq2929 Length=2839 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 198360 CAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATA 198419 || ||| ||| ||| || || |||||| | || | |||||||||||||| || || || Sbjct 1788 CAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAAAGAAAATC 1847 Query 198420 CTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAG 198479 || || ||||| || | || || || ||||||| |||||| ||||| || ||| | Sbjct 1848 CTGGAGTGGACCAGCAGTCCTGAGGAGGCTTTGAAAATTAGTATTTATCTCAATGATAGG 1907 Query 198480 TACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 198518 || || |||||||| | |||||||| |||||||||||| Sbjct 1908 TATGAGCTAGACGGAAGAGATCCTAATGGATACGTAGGT 1946 >seq3572 Length=181463 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 198358 TACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGA 198417 |||| ||| ||| ||| || || |||||| | || | |||||||||||||| || || | Sbjct 84505 TACAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAAAGAAAA 84446 Query 198418 TACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATA 198477 | || || ||||| | | || || || ||||||| |||||| ||||| || ||| Sbjct 84445 TCCTGGAGTGGACCACCAGTCCCGAGGAGGCTTTGAAAATTAGTATTTATCTCAATGATA 84386 Query 198478 AGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 198518 ||| || || || || | |||||||| |||||||||||| Sbjct 84385 GGTATGAGCTGGATGGAAGAGATCCTAATGGATACGTAGGT 84345 >seq40 Length=129947 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 198358 TACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGA 198417 |||| | | ||| ||| || || |||||| | || | |||||||||||||| || || | Sbjct 101686 TACAAAAGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCCAAGAAAA 101627 Query 198418 TACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATA 198477 | || || ||||| || | || || || ||||||| | ||| ||||| || ||| Sbjct 101626 TCCTGGAGTGGACCAGCAGTCCTGAGGAGGCTTTGAAAATTGGTAATTATCTCAATGATA 101567 Query 198478 AGTACGAACTAGACGGCACGGATCCTAACGGATACGTAG 198516 ||| ||||| || || | |||||| || |||| |||| Sbjct 101566 GGTATGAACTGGATGGAAGGGATCCCAATGGATTTGTAG 101528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981779019898370