Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2929 102 1e-16 seq3572 93.3 8e-14 seq3567 84.2 4e-11 >seq2929 Length=2839 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 183043 CAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATA 183102 || ||| | | ||| || || |||||| | || | ||||||||||||| || || || Sbjct 1788 CAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAAAGAAAATC 1847 Query 183103 CTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAG 183162 || || ||||| || | ||| || || ||||||| |||||| ||| | || ||| | Sbjct 1848 CTGGAGTGGACCAGCAGTCCTGAGGAGGCTTTGAAAATTAGTATTTATCTCAATGATAGG 1907 Query 183163 TACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 || || |||||||| | |||||||| |||||||||||| Sbjct 1908 TATGAGCTAGACGGAAGAGATCCTAATGGATACGTAGGT 1946 >seq3572 Length=181463 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 183041 TACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGA 183100 |||| ||| | | ||| || || |||||| | || | ||||||||||||| || || | Sbjct 84505 TACAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAAAGAAAA 84446 Query 183101 TACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATA 183160 | || || ||||| | | ||| || || ||||||| |||||| ||| | || ||| Sbjct 84445 TCCTGGAGTGGACCACCAGTCCCGAGGAGGCTTTGAAAATTAGTATTTATCTCAATGATA 84386 Query 183161 AGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 ||| || || || || | |||||||| |||||||||||| Sbjct 84385 GGTATGAGCTGGATGGAAGAGATCCTAATGGATACGTAGGT 84345 >seq3567 Length=183150 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | ||| | |||||||| ||| | || || | || |||| | ||||||| | Sbjct 57172 GATAGCTAAAGCCCTTTGGTGGTATTATTTCTCAAAGTGCATTGAATTCCTAGATACCAT 57113 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || || | || ||||| ||| ||||| || ||| | || ||||| |||||| Sbjct 57112 CTTCTTTGTCCTGAGGAAGAAGAACAATCAAGTATCATTTTTGCATGTATACCATCATGC 57053 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || |||||| | || | ||| | ||| | |||||| ||||||||||||| Sbjct 57052 CACCATGTTTCCAATATGGTGGATCGGTGTAAAATGGGTTGCAGGAGGTCA 57002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903367949188800