Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3215 116 4e-21 seq1979 105 6e-18 seq3660 96.9 3e-15 seq304 84.2 2e-11 >seq3215 Length=281622 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| |||| || ||| ||| | || || | |||||| || Sbjct 219975 GTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTCCC 220033 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||| || || || |||||||| ||||| |||||| ||| Sbjct 220034 AGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 220093 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | |||||| || || | ||||| ||| ||||| || ||||| Sbjct 220094 CACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTGAGAGT 220153 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 220154 TTTGACAAAGATCTGCAT 220171 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| |||||||| || ||||| || | || ||| | | | || || || Sbjct 223037 AAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCA-TCTTCCAG 223095 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || |||| || || || ||||| || || || || || ||||| || Sbjct 223096 CTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAAT 223155 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || | ||||| || || | ||| | ||| || || Sbjct 223156 CTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCC 223215 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||| || || |||||||||||| Sbjct 223216 AGTCAAAGTCTTCACAAAAATCTGCATG 223243 >seq1979 Length=378058 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 |||||| ||| |||||||||| ||||| | ||||| || || || ||||| || Sbjct 363403 CTCATCAGGGCTTGTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCC 363344 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| ||||||||||| ||||| |||| |||||||||||||||||| ||| ||| Sbjct 363343 CAGGTTCTGCTGATTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCC 363284 Query 148970 AGTTTC 148975 ||||| Sbjct 363283 TGTTTC 363278 >seq3660 Length=165149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 |||||| ||| |||||||||| ||||| | ||||| || || || ||||| || Sbjct 79227 CTCATCAGGGCTTGTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCC 79168 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | ||||| ||||||||||| ||||| |||| |||||||||||||||||| || ||| Sbjct 79167 TAGGTTCTGCTGATTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGCGTGCC 79108 Query 148970 AGTTTC 148975 ||||| Sbjct 79107 TGTTTC 79102 >seq304 Length=94255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || |||||||| || ||||| || | || ||| | | | || || || Sbjct 389 AAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCA-TCTTCCAG 447 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || |||| || || || ||||| || || || || || ||||| || Sbjct 448 CTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAAT 507 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || | ||||| || || | ||| | ||| || || Sbjct 508 CTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCC 567 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||| || || |||||||||||| Sbjct 568 AGTCAAAGTCTTCACAAAAATCTGCATG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483397656229200