Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3660 87.8 4e-12 seq1979 84.2 5e-11 >seq3660 Length=165149 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| ||||| || ||||| |||||| || || ||||| ||| | || || | || Sbjct 78558 TTTGCCATCTACCTGGAACCCTGGCATAATGACATCTTTGACTTCCTGGA-CTGCAAGAA 78616 Query 110817 AATCAA-GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 | || ||| ||||| || | || | ||||| || ||||| | ||||| |||| Sbjct 78617 GAACACTGGAAAGGAAGAGCAGCGTGCCAGAGATTTGTTCTATGCCCTCTGGATCCCAGA 78676 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | |||||||||||||| || | ||||| |||| | || |||||||| || | Sbjct 78677 TCTGTTCATGAAACGTGTGGAACAGAATGGACAGTGGACGCTGATGTGTCCCAATGAGTG 78736 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 ||||||||| | || | ||| | |||||||| | ||||| |||| Sbjct 78737 TCCTGGTCTGGCAGACTGCTGGGGAGAGGAGTTTGAGAAACTTTATGAAA 78786 >seq1979 Length=378058 Score = 84.2 bits (92), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| ||||| || ||||| |||||| || || ||||| ||| | || || | || Sbjct 362754 TTTGCCATCTACCTGGAACCCTGGCATAACGACATCTTTGACTTCCTGGA-CTGCAAGAA 362812 Query 110817 AATCAA-GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 | || ||| ||||| || | || | ||||| || ||||| | ||||| |||| Sbjct 362813 GAACACTGGAAAGGAAGAGCAGCGTGCCAGAGATTTGTTCTATGCCCTCTGGATCCCAGA 362872 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | |||||||||||||| || | ||||| |||| | || |||||||| || | Sbjct 362873 TCTGTTCATGAAACGTGTGGAACAGAATGGACAGTGGACGCTGATGTGTCCCAATGAGTG 362932 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 ||||||||| | || | ||| | || ||||| | ||||| |||| Sbjct 362933 TCCTGGTCTGGCAGACTGCTGGGGAGAGGAATTTGAGAAACTTTATGAAA 362982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186754560870630