Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3215 109 4e-19 seq304 95.1 8e-15 >seq3215 Length=281622 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | ||| |||||| |||||| || |||||||| ||| Sbjct 219945 CCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTC 220004 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || ||||| || || || ||||| |||||||||||||||||| | || Sbjct 220005 AAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 220064 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| |||| || | ||| || | || || Sbjct 220065 ATGCCTTCTTTGTCTTGGATCTTGGCCTTC-ACATTTTCAATGGTATCTGAGGGCTCTAC 220123 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || ||||| | ||||| ||||||||||||||| Sbjct 220124 CTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCATA 220172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| ||||||||||| || ||| ||||| || ||| Sbjct 223004 AAAATCTGCATGCCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATG 223063 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || ||||| | || |||| ||||| || |||||||||| ||| || Sbjct 223064 TTGTAGTCACTCAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGT 223123 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | || |||||||| ||| || ||| |||| || | ||| || Sbjct 223124 TGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTTTCAATGGTATC 223182 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||| || || || || || || || || || ||||| |||||||| Sbjct 223183 TGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 Query 33750 AGTTG 33754 |||| Sbjct 223243 -GTTG 223246 >seq304 Length=94255 Score = 95.1 bits (104), Expect = 8e-15 Identities = 171/245 (70%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| ||||||||||| || || ||||| || ||| Sbjct 356 AAAATCTGCATGCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATG 415 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || |||||| | || |||| ||||| || |||||||||| ||| || Sbjct 416 TTGTAGTCACTCAGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGT 475 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | || |||||||| ||| || ||| |||| || | ||| || Sbjct 476 TGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTTTCAATGGTATC 534 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||| || || || || || || || || || ||||| |||||||| Sbjct 535 TGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 Query 33750 AGTTG 33754 |||| Sbjct 595 -GTTG 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688656713600