Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq304 132 5e-26 seq3215 129 6e-25 >seq304 Length=94255 Score = 132 bits (146), Expect = 5e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||||||| | | | || ||||| |||||||||||||| |||| ||| Sbjct 373 ACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGT 432 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||||||||| | | | || ||||| ||||| || || ||||| || Sbjct 433 GCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCC 492 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || ||| || |||| | ||| | ||||| | ||||| || || | Sbjct 493 CTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAG 552 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| ||| || | |||||||||||| Sbjct 553 GGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 595 >seq3215 Length=281622 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || ||||| |||||||||||||| |||| ||| || | Sbjct 223028 CGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCA 223087 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||| | | | || ||||| ||||| || || ||||| || ||||| Sbjct 223088 TCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTG 223147 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | ||| | ||||| | ||||| || || | || | Sbjct 223148 TCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATG 223207 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||||| ||| || | |||||||||||| Sbjct 223208 GTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 223243 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||||||||||| ||| || |||||| | ||| || || | | Sbjct 219978 GACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTCCCAGCA 220037 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| |||||||| || ||||||||||| || || || |||| Sbjct 220038 AAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACA 220097 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||||| || || | || | || || || || |||||||| Sbjct 220098 TTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTG 220157 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 220158 ACAAAGATCTGCAT 220171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476588382238800