Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3262 96.9 5e-14 seq3447 91.5 2e-12 seq3269 87.8 3e-11 seq28 87.8 3e-11 >seq3262 Length=266767 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || ||||||||||| |||| | || ||||| ||| || Sbjct 58454 ATCTACAAGGTGATGAAACAGGTGCACCCTGACACCGGT-----AT-CTCCAGCAAAGCC 58401 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||| ||||| | || || || | | || || Sbjct 58400 ATGAGCATCATGAACAGCTTTGTCAATGACATCTTTGAACGTATTGCCGGTGAAGCTTCC 58341 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || |||||||||| ||| ||| || || ||| ||||||| || || Sbjct 58340 CGCCTTGCCCACTACAACAAGCGCTCCACCATCACCAGCCGAGAGGTCCAGACTGCTGTC 58281 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || || |||| |||||| ||| |||||||| Sbjct 58280 CGTCTCTTGCTGCCTGGTGAGCTTGCCAAGCACGCTGTCAGTGAGGGCAC 58231 Score = 91.5 bits (100), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || ||||||||||| |||| | || ||||| ||| || Sbjct 175912 ATCTACAAGGTGATGAAACAGGTGCACCCTGACACCGGT-----AT-CTCCAGCAAAGCC 175965 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||| ||||| | || || || | | || || Sbjct 175966 ATGAGCATCATGAACAGCTTTGTCAATGACATCTTTGAACGTATTGCCGGTGAAGCTTCC 176025 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||||||||| ||| ||| || || ||| ||||||| || || Sbjct 176026 CGCCTTGCCCACTACAACAAGCGTTCCACCATCACCAGCCGAGAGGTCCAGACTGCTGTC 176085 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || || |||| |||||| ||| |||||||| Sbjct 176086 CGTCTCTTGTTGCCTGGTGAGCTTGCCAAGCACGCTGTCAGTGAGGGCAC 176135 Score = 87.8 bits (96), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||| | || ||||||||||| |||| | || |||| ||| || Sbjct 52979 ATCTACAAAGTGATGAAACAGGTGCACCCTGACACCGGT-----AT-TTCCAGCAAAGCC 52926 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||| ||||| | || || || | | || || Sbjct 52925 ATGAGCATCATGAACAGCTTTGTCAATGACATCTTTGAACGTATTGCCGGTGAAGCTTCC 52866 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || |||||||||| ||| ||| || || ||| ||||||| || || Sbjct 52865 CGCCTTGCCCACTACAACAAGCGCTCCACCATCACCAGCCGAGAGGTCCAGACTGCTGTC 52806 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || || |||| |||||| ||| |||||||| Sbjct 52805 CGTCTCTTGCTGCCTGGTGAGCTTGCCAAGCACGCTGTCAGTGAGGGCAC 52756 >seq3447 Length=210637 Score = 91.5 bits (100), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || ||||||||||| |||| | || ||||| ||| || Sbjct 193226 ATCTACAAGGTGATGAAACAGGTGCACCCTGACACCGGT-----AT-CTCCAGCAAAGCC 193279 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||| ||||| | || || || | | || || Sbjct 193280 ATGAGCATCATGAACAGCTTTGTCAATGACATCTTTGAACGTATTGCCGGTGAAGCTTCC 193339 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||||||||| ||| ||| || || ||| ||||||| || || Sbjct 193340 CGCCTTGCCCACTACAACAAGCGTTCCACCATCACCAGCCGAGAGGTCCAGACTGCTGTC 193399 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || || |||| |||||| ||| |||||||| Sbjct 193400 CGTCTCTTGCTGCCTGGTGAGCTTGCCAAGCACGCTGTCAGTGAGGGCAC 193449 >seq3269 Length=264893 Score = 87.8 bits (96), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || ||||||||||| |||| | || ||||| ||| || Sbjct 254299 ATCTACAAGGTGATGAAACAGGTGCACCCTGACACCGGT-----AT-CTCCAGCAAAGCC 254352 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||| ||||| | || || || | | || || Sbjct 254353 ATGAGCATCATGAACAGCTTTGTCAATGACATCTTTGAACGTATTGCCGGTGAAGCTTCC 254412 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||||||||| || ||| || || ||| ||||||| || || Sbjct 254413 CGCCTTGCCCACTACAACAAGCGTTCTACCATCACCAGCCGAGAGGTCCAGACTGCTGTC 254472 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || || |||| |||||| ||| |||||||| Sbjct 254473 CGTCTCTTGCTGCCTGGTGAGCTTGCCAAGCACGCTGTCAGTGAGGGCAC 254522 >seq28 Length=132660 Score = 87.8 bits (96), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || ||||||||||| |||| | || ||||| ||| || Sbjct 119202 ATCTACAAGGTGATGAAACAGGTGCACCCTGACACCGGT-----AT-CTCCAGCAAAGCC 119149 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||| ||||| | || || || | | || || Sbjct 119148 ATGAGCATCATGAACAGCTTTGTCAATGACATCTTTGAACGTATTGCCGGTGAAGCTTCC 119089 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||||||||| || ||| || || ||| ||||||| || || Sbjct 119088 CGCCTTGCCCACTACAACAAGCGTTCTACCATCACCAGCCGAGAGGTCCAGACTGCTGTC 119029 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || || |||| |||||| ||| |||||||| Sbjct 119028 CGTCTCTTGCTGCCTGGTGAGCTTGCCAAGCACGCTGTCAGTGAGGGCAC 118979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177441789460460