Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3215 113 4e-20 seq304 104 2e-17 >seq3215 Length=281622 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | ||| | || ||| || ||||||||||| ||| | Sbjct 219945 CCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTC 220004 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| |||||| || ||||| ||||| |||||||| || | ||| Sbjct 220005 AAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 220064 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || ||||| |||||| ||||| | || | | || || | || ||| Sbjct 220065 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACC 220124 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | |||||| ||||| |||||||| Sbjct 220125 TCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | |||||||||||| | || || || ||||||||||| || | Sbjct 223016 CCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTC 223075 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||||||| ||||| ||||| |||| || || ||||| | || Sbjct 223076 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 223135 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||| ||||| | || | | || || | || ||| Sbjct 223136 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 223195 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || |||||||| |||||||| |||||||| Sbjct 223196 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 >seq304 Length=94255 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||||||| | ||| || || ||||||||||| || | Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||||||| ||||| ||||| |||| || || ||||| | || Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||| ||||| | || | | || || | || ||| Sbjct 488 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 547 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || |||||||| |||||||| |||||||| Sbjct 548 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450772018256400