Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq159 187 3e-42 seq3660 93.3 6e-14 seq1979 89.7 7e-13 >seq159 Length=112901 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| || || ||||||||||| ||||| || ||||||||||| ||||| Sbjct 34591 CCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAA 34650 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| |||||| || || ||| || | ||||| | ||||| || | |||||||| Sbjct 34651 AATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTT 34710 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 ||||||| |||||||| || |||||||| ||||||||||| ||||| || || |||||| Sbjct 34711 CTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATT 34770 Query 40179 GTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||| |||||||| ||||| | |||||| || Sbjct 34771 TTATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 154 bits (170), Expect = 2e-32 Identities = 171/225 (76%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || || | ||| || ||||| || || ||||| | ||| | || | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||||| |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCA-CTTCTGTGCCCAATCA 39814 ||| || ||||||| | | || | || || || ||||| | | | ||||| ||| Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTAT-AGCCCAGTCA 33960 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || || ||||||||||||||||| ||||| || ||||| |||||| Sbjct 33961 GCCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGA 34005 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||||||||| || ||||||||||| || || || ||||| || ||||| || Sbjct 32997 TGACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCC 33056 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| ||||| | |||||||| ||||| || || Sbjct 33057 TTCCAAAGATATGTGCTCCATGAAGTCAAATGGGTT 33092 >seq3660 Length=165149 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||| | ||||||||||||| || | || ||| | ||||| || || || | || Sbjct 81869 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 81810 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||| || || || | || || || || || ||||| | |||||| ||| Sbjct 81809 TTAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATAATATTCT 81750 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC 68614 | || | || ||||| | |||||| | | |||||||||||||||||||| || Sbjct 81749 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGGAATGC 81696 >seq1979 Length=378058 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||| | ||||||||||||| || | || ||| | ||||| || || || | || Sbjct 366297 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 366238 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||| || || || | || || || || || ||||| | || ||| ||| Sbjct 366237 TAAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATTATATTCT 366178 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC 68614 | || | || ||||| | |||||| | | |||||||||||||||||||| || Sbjct 366177 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGGAATGC 366124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686875914241200