Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq159 172 4e-38 >seq159 Length=112901 Score = 172 bits (190), Expect = 4e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || ||||||| ||||| ||| ||||||||||||||||| |||| Sbjct 34789 TTTGTCATTTTTCCTATAAAATATCAAGACATCTGGAAAATGTACAAAAAAGCAGAGGCA 34730 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| || |||||||| ||| | |||||||||||| ||| ||| | Sbjct 34729 TCTTTTTGGACTGCTGAAGAAGTAGATCTTTCTAAAGACTTAGGACACTGGGAGAAGCTG 34670 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| | |||||||||||||| ||| || ||||| || |||||||| || || || Sbjct 34669 AAGCCAGAGGAAAAACATTTTATTTCTCATGTATTGGCCTTCTTTGCTGCTAGTGATGGC 34610 Query 43880 ATAGTCAATGAAAATTTGGTTAG 43902 || ||||||||||||||||| || Sbjct 34609 ATTGTCAATGAAAATTTGGTAAG 34587 Score = 100 bits (110), Expect = 2e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 44488 TGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547 |||| ||||||| ||||| || ||||| | || || |||||||| ||||| |||||||| Sbjct 33099 TGTAGAAAACCCATTTGACTTCATGGAGCACATATCTTTGGAAGGAAAAACCAACTTTTT 33040 Query 44548 TGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||||| || ||||| ||||||||| |||||| || ||| Sbjct 33039 TGAAAAGCGAGTTGGTGAATATCAGAAAATGGGAGTGATG 33000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437447499150