Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq304 138 1e-27 seq3215 129 5e-25 >seq304 Length=94255 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| ||||| |||||||| | ||||| ||||| ||||| |||||||| | Sbjct 366 TGCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCAC 425 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| ||||||||||| || |||| ||||| ||||| || || | Sbjct 426 TCAGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTG 485 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | |||||||| || |||||| |||| |||| | || |||| |||| || Sbjct 486 GTATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGC-TCT 544 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | || || |||| ||| |||||||| || ||||| Sbjct 545 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 >seq3215 Length=281622 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| |||||||| | || || ||||| ||||| |||||||| | Sbjct 223014 TGCCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCAC 223073 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| ||||||||||| || |||| ||||| ||||| || || | Sbjct 223074 TCAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTG 223133 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | |||||||| || |||||| |||| |||| | || |||| |||| || Sbjct 223134 GTATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGC-TCT 223192 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | || || |||| ||| |||||||| || ||||| Sbjct 223193 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 Score = 113 bits (124), Expect = 4e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 ||||| || || || || | |||| || | ||| | || || ||||| ||||| ||| Sbjct 219936 AATTACTGGCCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTG 219995 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||||||||| | |||| | ||||| | ||| || || || | || | |||||| ||| Sbjct 219996 TAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGA 220055 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || || || | || ||||| || ||||||| |||| |||| | || |||| | Sbjct 220056 TCTGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAG 220115 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || | ||||| || |||||||| |||||||| |||||| Sbjct 220116 GGCTCTACCTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCATA 220172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424914564858960