Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3660 102 1e-16 seq1979 102 1e-16 >seq3660 Length=165149 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||||| ||| || ||||||||||| || ||| ||||| || | ||||| ||| Sbjct 79214 GTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGA 79155 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||||||||| |||||||| |||||||| ||||| || || || || ||| Sbjct 79154 TTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGG 79095 Query 118872 GACT 118875 |||| Sbjct 79094 GACT 79091 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||| ||| | ||||||||||| | | ||||||||||||| | |||||| ||||| || Sbjct 81146 TAGAGGTTGCTGGTGTATGGCTCTATGGACTCATTGTTACCAAGGATTTGTGCTGTAGAA 81087 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| | |||||||| Sbjct 81086 GCTGTGGGCATGGGGGCCAGCAACAGGCTGTT 81055 >seq1979 Length=378058 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||||| ||| || ||||||||||| || ||| ||||| |||| ||||| ||| Sbjct 363390 GTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGA 363331 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||||||||| |||||||| |||||||| || || || || || || ||| Sbjct 363330 TTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGG 363271 Query 118872 GACT 118875 |||| Sbjct 363270 GACT 363267 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||| ||| | ||||||||||| | | ||||||||||||| | |||||| ||||| || Sbjct 365284 TAGAGGTTGCTGGTGTATGGCTCTATGGACTCATTGTTACCAAGGATTTGTGCTGTAGAA 365225 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| | |||||||| Sbjct 365224 GCTGTGGGCATGGGGGCCAGCAACAGGCTGTT 365193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618405592414800