Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3154 123 3e-23 seq159 82.4 8e-11 >seq3154 Length=830492 Score = 123 bits (136), Expect = 3e-23 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | ||| |||||||||||||| ||| ||||| ||||| || || Sbjct 140036 GTGAAAATATAACGGGGGCTGGCAGCATCCTTGCCTCCATGGAGACGAGTACCAAACTGA 139977 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || ||||| || |||||| || |||||||| || |||||||||| Sbjct 139976 CCAATGGGCTGCAGCAGGTTGAGATTGTTGCTACCTACAAAGTTCTGGGCCAAGTTGATG 139917 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | | ||||||||| ||||| || | | ||| | || | || Sbjct 139916 ATGGTGCCCATCAAAGACATCTCACCATGATGATAGGCAGACATCTCAGAGACAGAACCA 139857 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 || ||||| |||||||| || || | |||||| ||| | ||||| | | || || Sbjct 139856 GCTAGCTGGGCCACCTTGATTTCCTTCTGCAGGTTACGCTTCAAGCAGGTAAACATGACT 139797 Query 117545 TTGCGCTGACTTGGCTTCAGACC 117567 || | || | |||||| | ||| Sbjct 139796 TTTCTTTGGCCTGGCTTGAAACC 139774 Score = 109 bits (120), Expect = 6e-19 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || |||| |||||| ||||||||||| || || || || |||||||| Sbjct 140036 GTGAAAATATAACGGGGGCTGGCAGCATCCTTGCCTCCATGGAGACGAGTACCAAACTGA 139977 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || |||||||| |||||| || || || ||||| ||||| || | Sbjct 139976 CCAATGGGCTGCAGCAGGTTGAGATTGTTGCTACCTACAAAGTTCTGGGCCAAGTTGATG 139917 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || |||||| || | | ||||| || ||||| || | | ||| | || | || Sbjct 139916 ATGGTGCCCATCAAAGACATCTCACCATGATGATAGGCAGACATCTCAGAGACAGAACCA 139857 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || | ||| |||||||| || ||| || |||||| ||| | |||| | || || Sbjct 139856 GCTAGCTGGGCCACCTTGATTTCCTTCTGCAGGTTACGCTTCAAGCAGGTAAACATGACT 139797 Query 152269 TTGCGCTGGGATGGTTTCAAACC 152291 || | ||| ||| || ||||| Sbjct 139796 TTTCTTTGGCCTGGCTTGAAACC 139774 >seq159 Length=112901 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| ||||| || |||||||||||||||||||| || |||||||| || |||| |||||| Sbjct 33018 ATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCTTCCAAAGATATGTGCTCCAT 33077 Query 74522 CCAGTCGAAAGGGTT 74536 |||| || ||||| Sbjct 33078 GAAGTCAAATGGGTT 33092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189802034000