Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3215 176 5e-39 seq304 170 2e-37 seq3154 111 2e-19 seq3547 107 2e-18 seq282 107 2e-18 seq768 84.2 2e-11 >seq3215 Length=281622 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || ||||| ||||| |||||||| ||| || Sbjct 223242 ATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCATCA 223183 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| ||||||| || ||||| ||||| ||||| || || || ||||| Sbjct 223182 GATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGACCAA 223123 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||| || || || |||| || ||||| ||||| || Sbjct 223122 CAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGAGTGACTACAAC 223063 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || |||||||| |||||| | || |||||||| || ||||| Sbjct 223062 ATTCAGAAAGAATCCACCCTTCATTTGGTGTTGCGTCTACGTGGTGG 223016 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || || || ||||| ||| | Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| ||||||| || || || ||||| || || ||||| ||||| ||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | || |||||||| ||||| | || |||| ||| ||| | ||| ||||| || Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 219993 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || || |||||||| ||||| || ||||||| || ||||| || Sbjct 219992 CATTCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGTCTCCGTGGTGGCCA 219942 >seq304 Length=94255 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || ||||| ||||| |||||||| ||| || Sbjct 594 ATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCATCA 535 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| ||||||| || ||||| ||||| ||||| || || || ||||| Sbjct 534 GATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGACCAA 475 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||| || || || |||| || ||||| ||||| || Sbjct 474 CAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGTGACTACAAC 415 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || |||||| | || |||||||| || ||||| Sbjct 414 ATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGG 368 >seq3154 Length=830492 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| | ||| |||||| || || || |||||||| ||||| | || | || Sbjct 139808 CCTGCTTGAAGCGTAACCTGCAGAAGGAAATCAAGGTGGCCCAGCTAGCTGGTTCTGTCT 139867 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||| | |||||||| || || ||| ||| | ||||||||| ||||| | | Sbjct 139868 CTGAGATGTCTGCCTATCATCATGGTGAGATGTCTTTGATGGGCACCATCATCAACTTGG 139927 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||||||||||| ||| || || || ||| | || |||| ||| |||||||| | Sbjct 139928 CCCAGAACTTTGTAGGTAGCAACAATCTCAACCTGCTGCAGCCCATTGGTCAGTTTGGTA 139987 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | || ||| || |||||||||||||| ||| ||||||| || ||||| Sbjct 139988 CTCGTCTCCATGGAGGCAAGGATGCTGCCAGCCCCCGTTATATTTTCAC 140036 >seq3547 Length=186543 Score = 107 bits (118), Expect = 2e-18 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || ||||||||||||||| | || |||||||| ||||| || ||||||| ||| Sbjct 89059 GGCATCCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGC 89000 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 ||||| ||| ||||| || |||| ||||| |||||||| || |||| | |||||||| Sbjct 88999 ACCCTCAGC-GACTACAACATCCAGAAGGAGTCCACTCTCCACTTAGTGCTCCGTCTTCG 88941 Query 27627 CGGTGG 27632 ||||| Sbjct 88940 TGGTGG 88935 >seq282 Length=97041 Score = 107 bits (118), Expect = 2e-18 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || ||||||||||||||| | || |||||||| ||||| || ||||||| ||| Sbjct 90702 GGCATCCCCCCAGACCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTTGAGGATGGTCGC 90643 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 ||||| ||| ||||| || |||| ||||| |||||||| || |||| | |||||||| Sbjct 90642 ACCCTCAGC-GACTACAACATCCAGAAGGAGTCCACTCTCCACTTAGTGCTCCGTCTTCG 90584 Query 27627 CGGTGG 27632 ||||| Sbjct 90583 TGGTGG 90578 >seq768 Length=485130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || || |||||||| | Sbjct 224435 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATCACCCTCGAGGTTGAACCCTCG 224376 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| |||| | ||||| || || ||||||||||| || Sbjct 224375 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGG 224332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570283096389600