Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq304 141 8e-29 seq3215 138 1e-27 >seq304 Length=94255 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| |||| || ||| | ||||| ||||| || || || || Sbjct 595 CATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCATC 536 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || |||||||||||||| || |||||||| || || Sbjct 535 AGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGACCA 476 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || ||||| ||||||| | ||| | || ||||| Sbjct 475 ACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGTGACTACAA 416 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || ||| | |||||||| |||||| |||| |||||||| Sbjct 415 CATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGCAT 365 >seq3215 Length=281622 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| |||| || ||| | ||||| ||||| || || || || Sbjct 223243 CATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCATC 223184 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || |||||||||||||| || |||||||| || || Sbjct 223183 AGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGACCA 223124 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || ||||| ||||||| | ||| | || ||||| Sbjct 223123 ACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGAGTGACTACAA 223064 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || ||| | |||||||| |||||| | || |||||||| Sbjct 223063 CATTCAGAAAGAATCCACCCTTCATTTGGTGTTGCGTCTACGTGGTGGCAT 223013 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || |||||| | || || || || || || || || Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || ||||||||||||||||| || || ||||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| || ||| | ||| |||||| Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 219992 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||| || | ||| | || ||||| | || |||||| Sbjct 219991 ATTCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGTCTCCGTGGTGGC 219944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434897578281600