Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3215 152 1e-31 seq304 132 1e-25 seq768 98.7 2e-15 seq1979 84.2 5e-11 >seq3215 Length=281622 Score = 152 bits (168), Expect = 1e-31 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || ||||| || |||||||||||||| || ||||| || || | ||| ||| | ||||| Sbjct 219960 AGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAA-GGTGCGACCATC 220018 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| |||||| || || ||||| | || || || || || |||| ||||| ||||| Sbjct 220019 TTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTC 220078 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| ||||| ||||| ||||| || ||| || ||||| || ||||| || Sbjct 220079 TTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGT 220138 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| || ||||| | |||||| Sbjct 220139 CTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| ||||| || ||||| || || ||||| | |||||||||||||| Sbjct 223040 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGCTGT 223099 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || || |||||||||||||| || | || || ||||| || ||||| Sbjct 223100 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 223159 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| ||||| ||||| || || || ||||| || || || ||||| || || Sbjct 223160 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 223219 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| | |||||| || Sbjct 223220 AAAGTCTTCACAAAAATCTGCATGTT 223245 >seq304 Length=94255 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || || ||||| || ||||| || || ||||| | ||||||||||||||| Sbjct 392 TGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCTTCCAGCTGT 451 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || || |||||||||||||| || | || || ||||| || ||||| Sbjct 452 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 511 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| ||||| ||||| || || || ||||| || || || ||||| || || Sbjct 512 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 571 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| | |||||| || Sbjct 572 AAAGTCTTCACAAAAATCTGCATGTT 597 >seq768 Length=485130 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| || || ||||| || || || ||| |||||||||| Sbjct 224332 CCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTATCCGAGGGTTCAACCTCG 224391 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 224392 AGGGTGATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 224435 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| |||||||||||||| || || ||||| || || || ||| |||||||||| Sbjct 228980 CCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTATCCGAGGGTTCAACCTCG 229039 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 229040 AGGGTGATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 229083 >seq1979 Length=378058 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 178226 TCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCC 178285 || ||| ||| || || | ||| |||||| ||| || || | ||||| ||| | Sbjct 362989 TCTTACCTTTCATAAAGTTTCTCAAATTCCTCTCCCCAGCAGTCTGCCAGACCAGGACAC 362930 Query 178286 TCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCA 178345 |||||||| || | || ||||||| || | | | ||| ||||||||||| || || Sbjct 362929 TCATTGGGACACATCAGCGTCCACTGTCCATTCTGTTCCACACGTTTCATGAACAGATCT 362870 Query 178346 GAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATCAGGTCATTTCCTCCGGGTT-T 178404 | | |||||| ||||||||| | |||||||| | | | || |||| | | ||| | Sbjct 362869 GGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCTTTC--CAGTGTTCT 362812 Query 178405 TCTGGCA-TCAACAAAGTCAAAAATGTCCACATGCCA 178440 ||| ||| || | |||||||| ||||| |||||| Sbjct 362811 TCTTGCAGTCCAGGAAGTCAAAGATGTCGTTATGCCA 362775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159095118237950