Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3215 158 3e-33 seq304 114 3e-20 seq3151 95.1 3e-14 seq402 95.1 3e-14 >seq3215 Length=281622 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| ||||||||||| ||||| || | ||||| ||| ||| || Sbjct 219950 ACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGT 220009 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||||||||| ||||| | || || || || || ||||| || Sbjct 220010 GCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCC 220069 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||||||| ||| ||||| ||||||| || || || | Sbjct 220070 TTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAG 220129 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | |||||| Sbjct 220130 GGTGATGGTCTTGCCTGTGAGAGTTTT 220156 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||||||||| || | ||||| || || || | |||||||| ||||| Sbjct 223040 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGCTGT 223099 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || || ||||||||||| || || || || || |||||||| ||||| Sbjct 223100 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 223159 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||| ||||| ||||| | || || || | || || ||||| || ||| Sbjct 223160 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 223219 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || | ||||| || Sbjct 223220 AAAGTCTTCACAAAAATCTGCATGTT 223245 >seq304 Length=94255 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | ||||| || || || | |||||||| ||||| Sbjct 392 TGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCTTCCAGCTGT 451 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || || ||||||||||| || || || || || |||||||| ||||| Sbjct 452 TTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTG 511 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||| ||||| ||||| | || || || | || || ||||| || ||| Sbjct 512 GCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTC 571 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || | ||||| || Sbjct 572 AAAGTCTTCACAAAAATCTGCATGTT 597 >seq3151 Length=308484 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || || |||||||| || || ||||| || ||||| |||||||| |||||||| Sbjct 47708 GAAAATCTGCCCGTCAGTAATGGAAATCACATTGGTTGGGATGTAAGCAGACACATCACC 47649 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 || || || || | ||| ||||| || || || || ||||||||||| || | ||| Sbjct 47648 AGCCTGGGTCTCAATAACTGGTAATGCAGTCAGAGAGCCACCACCAAAGTTGTCATT 47592 >seq402 Length=536460 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 ||||| || |||||||| ||||| ||||| || ||||||||||||| ||||| ||| Sbjct 162613 ATTTCAAGTCTTGGTAAGGTTCTTCGCGTTTCTTCGAATTAAACCACATGTTCCACTGCT 162672 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||| |||||| |||| | | |||||||| Sbjct 162673 TGTGCGGGTTCCCGTCAATTCCTTTGAGTTTTATACTTGCGTACGTACTCCCCAGGTGGA 162732 Query 7845 AT-ATTTACGCGTTAGCTT 7862 | || ||| |||| ||| Sbjct 162733 GTGCTTAACGTGTTAACTT 162751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192472680258020