Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq159 165 1e-35 seq3660 87.8 2e-12 seq1979 84.2 3e-11 >seq159 Length=112901 Score = 165 bits (182), Expect = 1e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| ||||| || || ||||||||||||||||| || || |||||||| ||||| Sbjct 34591 CCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAA 34650 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| |||||| | | |||| || | ||||| | ||||| || | |||||||| Sbjct 34651 AATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTT 34710 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 ||||||| |||||||| ||||||||||||||||| ||||| ||||| || || |||| Sbjct 34711 CTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATT 34770 Query 48703 GGATTGGGAAAATAACAAATCTATTTGGATT 48733 || || ||||| ||||| | |||||| || Sbjct 34771 TTATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 145 bits (160), Expect = 1e-29 Identities = 167/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || || || | ||| || ||||| || || ||||| | || | ||| ||| Sbjct 33784 TCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCTTG 33843 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||||| || | || ||||| ||||| ||||| || ||||| || || ||||| || Sbjct 33844 AGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAGCA 33903 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCCACCGTTGTGCCCAATCAGCC 48341 ||| ||||||| | | ||||| | ||| | ||||| ||| ||||| |||||| Sbjct 33904 ATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAGCC 33963 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 || ||||||||||||||||| ||||| || ||||| |||||||| Sbjct 33964 TTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGAAA 34007 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||||| ||||||||||| || || || || ||||| || ||||| ||| Sbjct 32998 GACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCT 33057 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 ||||| ||||| | ||||| || |||||||| || || |||| |||| Sbjct 33058 TCCAAAGATATGTGCTCCATGAAGTCAAATGGGTTTTCTACATTCCAAAT 33107 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 ||||| ||||| | | || |||||||| |||||||| ||||||||||| || || ||| Sbjct 34321 TAAGTGTCTATAAGCAAGCTGTACATTTCAGAGTGAATGTTTTCAATTGCAATTTGGAAT 34380 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 || || || || || || ||||||||||| |||||| Sbjct 34381 CCATAGAAGCACCTAGCCTCTGTGATCTGGACCTCC 34416 >seq3660 Length=165149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||| | |||||||||| || |||| || ||| ||||||| || || || | || Sbjct 81869 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 81810 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||||| || || || | || || || ||||| ||||| | ||||| ||| Sbjct 81809 TTAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATAATATTCT 81750 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||||||||||||||||||| Sbjct 81749 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGGAA 81699 >seq1979 Length=378058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||| | |||||||||| || |||| || ||| ||||||| || || || | || Sbjct 366297 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 366238 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||||| || || || | || || || ||||| ||||| | || || ||| Sbjct 366237 TAAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATTATATTCT 366178 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||||||||||||||||||| Sbjct 366177 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGGAA 366127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694635542731200