Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq159 176 6e-39 seq3660 84.2 3e-11 seq1979 84.2 3e-11 seq602 84.2 3e-11 >seq159 Length=112901 Score = 176 bits (194), Expect = 6e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| ||||| || || ||||||||||||||||| || ||||||||||| |||||| Sbjct 34592 CAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAA 34651 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || |||||| || | |||| || | ||||| | ||||| || | ||||||||| Sbjct 34652 ATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTC 34711 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 |||||| ||||| || || |||||||||||||| ||||| ||||| || || |||||| Sbjct 34712 TTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTT 34771 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATT 47222 || |||||||| ||||| | |||||| || Sbjct 34772 TATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 145 bits (160), Expect = 1e-29 Identities = 167/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || || || | ||| || ||||| || || ||||| | || | || ||| Sbjct 33784 TCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCTTG 33843 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||| ||||| || ||||| || || || || || Sbjct 33844 AGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAGCA 33903 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTTTGAGCCCAATCAGCC 46830 | || ||||||| | | ||||||| || || ||||| | | |||||| |||||| Sbjct 33904 ATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAGCC 33963 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||||||||||||||||| ||||| || ||||| |||||||| Sbjct 33964 TTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGAAA 34007 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||||||| || |||||||| || || || || ||||| || ||||| || Sbjct 32997 TGACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCC 33056 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||||| ||||| | ||||| || ||||| || || Sbjct 33057 TTCCAAAGATATGTGCTCCATGAAGTCAAATGGGTT 33092 >seq3660 Length=165149 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| | |||||||||||||| ||||| || || || || |||||||| || Sbjct 79202 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGATTGCTCTTCCTG 79143 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 ||||| |||||||| || || | | || || || ||||| |||| || || || || Sbjct 79142 TTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGGACTCTATTAT 79084 >seq1979 Length=378058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| | |||||||||||||| ||||| || || || || |||||||| || Sbjct 363378 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCTG 363319 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 ||||| |||||||| || || | | || || || ||||| |||| || || || || Sbjct 363318 TTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGGACTCTATTAT 363260 >seq602 Length=508488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 170093 GTATATATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAATGAGG 170152 ||||||||||||| || ||||| ||||| ||| | |||| ||| || |||||||||| Sbjct 230961 GTATATATGAGCCCGGTAAACGCCACTGGCTGAAAGTGAAGAAAGATTATTTGAATGAGG 231020 Query 170153 GTTCGATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGG 170201 | | ||||| || |||||||| | ||||| |||| || ||||| || Sbjct 231021 GAGCAATGGCCGACACTGCAGATCTGGTAGTGCTGGGAGCCTATTACGG 231069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712900268265600