Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2153 159 4e-34 seq2942 134 2e-26 >seq2153 Length=2898250 Score = 159 bits (176), Expect = 4e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| || || |||||||| ||||| || |||| |||||| || || Sbjct 643484 AAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAAG 643543 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | || ||| || ||| ||| | ||||| | | | ||||||||| | || |||||| Sbjct 643544 TGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTTCT 643603 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || | |||||||||||||| || || ||||| ||||| | |||||| |||| ||||||| Sbjct 643604 TCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATTGA 643663 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || || || || |||||||||| ||||||| Sbjct 643664 ATAGGGAATATTACAAATCTATGGGGATTTT 643694 Score = 158 bits (174), Expect = 1e-33 Identities = 173/228 (76%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||||| ||| || | ||| || || || | || ||||||| |||||||| | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||||||||| || |||||||| ||||| |||||||||||||| || || ||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 24277 CAATAAGTCTTTCTCCATA-ACCGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGG 24333 ||| || ||||||| ||| | | | || ||| ||||| ||| ||||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 |||||||||||||||| || | ||| || |||||||| || | |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGT 642837 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | ||| ||||| || || | || ||||| || || || || || ||||| Sbjct 643176 ATCTTTGATATAGGTATCTATTAATAAGCTGTACATCTCACTGTGGATATTCTCCATGGC 643235 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 | |||||| || ||||||||||| || || || |||||||| ||| ||| |||||||| Sbjct 643236 AACTTGAAAACCATAGAAACATCTTGCTTCTGTTATCTGTACCTCTTTACTGAATCGTTC 643295 >seq2942 Length=2007428 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 |||| || || ||||| |||||||||||||| | ||||| ||| |||||||||| | Sbjct 1921846 TATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAACGCAGCGTAATAAATATTC 1921787 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 53518 || |||||| |||||||| || || |||||| | || ||||||||||| | | | Sbjct 1921786 TCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCAAATGGATATCTCATTAAT 1921727 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 ||||| ||||||||||| ||||| ||||| | ||||| || | ||||||| | || || Sbjct 1921726 ATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGACGATGTCTCATGTTGGA 1921668 Score = 125 bits (138), Expect = 8e-24 Identities = 153/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| || || || ||||| ||||| || | || |||||||| | ||||||||||| | Sbjct 1920160 TTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACACATCAAGGT 1920101 Query 54010 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||| | ||| | | ||| ||| ||||||||||| | |||||||||||| || || ||| Sbjct 1920100 CCAGTTTCCAT--TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACAGGGC-ATA 1920044 Query 54068 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 |||| |||||||| || ||||| || || || ||||||||||| | ||| | ||| | Sbjct 1920043 GAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAACTC 1919984 Query 54127 CATAATATCAGAATGCCACGGTTC 54150 | || ||| | ||||| ||||| Sbjct 1919983 GAAAACATCTGCGTGCCATGGTTC 1919960 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||||||||||| ||||| | || || |||||||||||||| | ||| | Sbjct 1922581 TACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTAT 1922522 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || |||||||| || | || ||||| || || || || ||||| || |||| ||||| Sbjct 1922521 AGCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAA 1922462 Query 53269 ACTATTTCTAAGACC 53283 ||||||||| | ||| Sbjct 1922461 ACTATTTCTTACACC 1922447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | |||||| || ||||| |||||||| ||||| || || | ||||||||||| Sbjct 1920696 TATTCCACTATCTCTGTACAAAGGTTACTACATTTGATAGTACCAAGGTTTTGTTGATTT 1920637 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||| ||||||| ||| ||||| | ||| |||| |||||||| ||| |||| ||| Sbjct 1920636 GATTTTCTGTTACAGCTATCTTTATATAACATGTATGGTGTACCAGTCTCAGTCTGAGAT 1920577 Query 53870 TCTATAATCGCTTTCCA 53886 ||||| || || | ||| Sbjct 1920576 TCTATTATAGCATACCA 1920560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593688433227120