Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1919 113 4e-20 seq3036 96.9 3e-15 seq2445 95.1 1e-14 >seq1919 Length=159031 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| ||||||||||| ||||| |||| || || ||||| || ||||||||||| Sbjct 44210 ACCTCCACGTAATCTCAATACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAATCCGA 44269 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | ||| || || || |||||||| | || | ||||| ||||| || || Sbjct 44270 GAGAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCGCTGTTGATCTGGTGG 44329 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGA 118689 ||||| || || ||| ||| || ||| || | ||| | ||| || | || | |||| Sbjct 44330 AATGCCTTCTTTATCTTGAATCTTGGCTTTGACATTTTCTATGGTATCAGCTGGT-TCGA 44388 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || || |||| ||||| || || |||||||| Sbjct 44389 CCTCTAAGGTGATGGTCTTACCAGTCAATGTTTTGACGAAGATCTGCAT 44437 >seq3036 Length=1877736 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| ||| || ||||| |||||||||||||| Sbjct 1772156 TACCTCCTCTCAATCGAAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAG 1772215 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1772216 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1772275 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1772276 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1772334 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || ||||| || ||||| |||||||| Sbjct 1772335 ACTTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTAACAAAGATCTGCAT 1772384 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| ||| || ||||| |||||||||||||| Sbjct 1839274 TACCTCCTCTCAATCGAAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAG 1839333 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1839334 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1839393 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1839394 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1839452 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || ||||| || ||||| |||||||| Sbjct 1839453 ACTTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTAACAAAGATCTGCAT 1839502 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| ||| || ||||| |||||||||||||| Sbjct 1771244 TACCTCCTCTCAATCGAAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAG 1771303 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1771304 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1771363 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1771364 GAATTCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1771422 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 1771423 ACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 1771472 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| || || ||||| |||||||||||||| Sbjct 1838590 TACCTCCTCTCAATCGAAGTACAAGATGGAGAGTTGATTCTTTCTGAATGTTGTAATCAG 1838649 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1838650 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1838709 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | |||||| | || | || Sbjct 1838710 GAATTCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTGTCAGCTGGT-TCT 1838768 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 1838769 ACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 1838818 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| ||| || ||||| |||||||||||||| Sbjct 1838818 TACCTCCTCTCAATCGAAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAG 1838877 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1838878 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1838937 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1838938 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1838996 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 1838997 ACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 1839046 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| || ||||| |||||||||||||| | || | ||| || | Sbjct 1770809 CAAGATGGAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTA 1770868 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| ||||| |||| ||||| |||||||| || || || || ||||| ||| | Sbjct 1770869 GTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGA 1770928 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || ||| || | ||| | ||| || | || | || || |||| ||| | || || Sbjct 1770929 TCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCTACTTCGAGGGTGATGGTCTTT 1770987 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 1770988 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1771016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| || ||||| |||||||||||||| | || | ||| || | Sbjct 1771493 CAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTA 1771552 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| ||||| |||| ||||| |||||||| || || || || ||||| ||| | Sbjct 1771553 GTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGA 1771612 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || ||| || | ||| | ||| || | || | || || |||| ||| | || || Sbjct 1771613 TCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCTACTTCGAGGGTGATGGTCTTT 1771671 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 1771672 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1771700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| || || ||||| |||||||||||||| Sbjct 1771016 TACCTCCTCTCAATCGAAGTACAAGATGGAGAGTTGATTCTTTCTGAATGTTGTAATCAG 1771075 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1771076 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1771135 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1771136 GAATTCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1771194 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 1771195 ACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 1771244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| ||| || ||||| || ||||||||||| Sbjct 1771700 TACCTCCTCTCAATCGAAGTACAAGATGGAGTGTCGATTCTTTCTGGATGTTGTAATCAG 1771759 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1771760 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1771819 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1771820 GAATTCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1771878 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 1771879 ACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 1771928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||| | || | |||| ||| || ||||| || ||||||||||| Sbjct 1771928 TACCTCCTCTCAATCGAAGTACAAGATGGAGTGTCGATTCTTTCTGGATGTTGTAATCAG 1771987 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | ||| || || ||||| ||||| |||| ||||| |||||||| || | Sbjct 1771988 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1772047 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| || || ||| || | ||| | ||| || | || | || Sbjct 1772048 GAATTCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCT 1772106 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 1772107 ACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 1772156 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| || ||||| || ||||||||||| | || | ||| || | Sbjct 1839067 CAAGATGGAGTGTCGATTCTTTCTGGATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTA 1839126 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| ||||| |||| ||||| |||||||| || || || || ||||| ||| | Sbjct 1839127 GTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGA 1839186 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || ||| || | ||| | ||| || | || | || || |||| ||| | || || Sbjct 1839187 TCTTAGCTTTTACATTTTCAATGGTATCAGCTGGT-TCTACTTCGAGGGTGATGGTCTTT 1839245 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 1839246 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1839274 >seq2445 Length=2603117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| ||||||||||| || | |||| || || |||||||| |||||||| | | Sbjct 1149863 TACCTCCTCGTAATCTCAATACAAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGT--C 1149920 Query 118570 TCATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| | ||| || | ||||| ||||| |||| | | || || || || Sbjct 1149921 TGAAAGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGG 1149980 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 || || || || |||||| |||||| |||||| | ||| | ||| || | || | | Sbjct 1149981 GGGAATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTATCAGCTGGT-T 1150039 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| | ||| | ||||| || |||| || || || || |||||||| Sbjct 1150040 CTACCTCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAGATCTGCAT 1150091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| |||||||| || || | |||| || || |||||||| |||||||| || Sbjct 1149635 TACCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTC-- 1149692 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| | ||| || | ||||| ||||| |||| | | || || || || Sbjct 1149693 TGAAAGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGG 1149752 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 || || || || || ||| |||||| ||| || | ||| | ||| || | || | | Sbjct 1149753 GGGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGCTGGT-T 1149811 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| | ||| | ||||| || |||| || || || ||||||||||| Sbjct 1149812 CTACCTCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAAATCTGCAT 1149863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433806771020548