Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2445 125 1e-23 seq1919 120 5e-22 seq3036 111 2e-19 seq2241 102 1e-16 seq3602 84.2 3e-11 >seq2445 Length=2603117 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| ||||| | ||| | ||| |||||||| ||||| || |||||| Sbjct 1149409 CCTCCTCTTAATCTCAATACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1149468 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1149469 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1149528 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1149529 ATACCTTCTTTATCTTG 1149545 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||||||||||| ||| | ||| |||||||| || || || ||||| Sbjct 1078275 CCTCCTCGTAATCTTAATACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAT 1078334 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1078335 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1078394 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1078395 ATACCTTCTTTATCTTG 1078411 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||||||||| | ||| | ||| |||||||| || || || |||||| Sbjct 1078503 CCTCCTCGTAATCTTAATACAAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCTGAA 1078562 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1078563 AGCGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1078622 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1078623 ATACCTTCTTTATCTTG 1078639 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||||||||||| ||| | ||| |||||||| || || || ||||| Sbjct 1078731 CCTCCTCGTAATCTTAATACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAT 1078790 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||| ||| ||||| || ||| Sbjct 1078791 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGGGGA 1078850 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1078851 ATACCTTCTTTATCTTG 1078867 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||||||||| | ||| | ||| |||||||| || || || |||||| Sbjct 1149637 CCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAA 1149696 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1149697 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1149756 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1149757 ATACCTTCTTTATCTTG 1149773 Score = 118 bits (130), Expect = 2e-21 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||||||||| | ||| | ||| |||||||| || || || |||||| Sbjct 1078959 CCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAA 1079018 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1079019 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1079078 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||||| | |||||| Sbjct 1079079 ATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTATCAGCTGGTTCTACC 1079138 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||||| |||||||| || ||||| || | ||| || |||||| Sbjct 1079139 TCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAGATCTGCATT 1079186 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||||||||| | ||| | ||| |||||||| || || || ||||| Sbjct 1078047 CCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAT 1078106 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1078107 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1078166 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1078167 ATACCTTCTTTATCTTG 1078183 Score = 113 bits (124), Expect = 7e-20 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||| ||||| | ||| | ||| |||||||| || || || |||||| Sbjct 1149865 CCTCCTCGTAATCTCAATACAAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCTGAA 1149924 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||| |||||||| ||||||||||| || || || ||| Sbjct 1149925 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1149984 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||||| | |||||| Sbjct 1149985 ATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTATCAGCTGGTTCTACC 1150044 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||||| |||||||| || ||||| || | ||| || |||||| Sbjct 1150045 TCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAGATCTGCATT 1150092 >seq1919 Length=159031 Score = 120 bits (132), Expect = 5e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146062 TCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCT 146121 ||| ||||||||||| | || |||||||| || || ||||| || |||||||||| Sbjct 44222 TCTCAATACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAATCCGAGAGAGTTCTGCC 44281 Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| || | ||| ||||||||||||||||||| || ||||| || ||||| |||||||| Sbjct 44282 ATCTTCAAGTTGCTTTCCAGCAAAAATCAATCGCTGTTGATCTGGTGGAATGCCTTCTTT 44341 Query 146182 ATCTTG 146187 |||||| Sbjct 44342 ATCTTG 44347 >seq3036 Length=1877736 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| |||| | ||| | ||| | || |||||||| || || ||||| | Sbjct 1770788 TTCCACCTCTCAGTCGAAGTACAAGATGGAGTGTGGATTCTTTCTGAATGTTGTAATCAG 1770847 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || | Sbjct 1770848 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1770907 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 1770908 GAATTCCTTCCTTATCTTG 1770926 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||| | ||| | ||| |||||||| || || ||||| || Sbjct 1771018 CCTCCTCTCAATCGAAGTACAAGATGGAGAGTTGATTCTTTCTGAATGTTGTAATCAGAG 1771077 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || ||| Sbjct 1771078 AGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 1771137 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1771138 ATTCCTTCCTTATCTTG 1771154 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||| | ||| | ||| |||||||| || || ||||| || Sbjct 1838592 CCTCCTCTCAATCGAAGTACAAGATGGAGAGTTGATTCTTTCTGAATGTTGTAATCAGAG 1838651 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || ||| Sbjct 1838652 AGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 1838711 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1838712 ATTCCTTCCTTATCTTG 1838728 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | || | ||| | ||| | || |||||||| || || ||||| | Sbjct 1771472 TTCCTCCTCTCAATCGAAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAG 1771531 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || | Sbjct 1771532 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1771591 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 1771592 GAATTCCTTCCTTATCTTG 1771610 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | || | ||| | ||| | || |||||||| || || ||||| | Sbjct 1839046 TTCCTCCTCTCAATCGAAGTACAAGATGGAGTGTCGATTCTTTCTGGATGTTGTAATCAG 1839105 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || | Sbjct 1839106 AGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 1839165 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 1839166 GAATTCCTTCCTTATCTTG 1839184 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||| | ||| | || |||||||| || || ||||| || Sbjct 1771246 CCTCCTCTCAATCGAAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGAG 1771305 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || ||| Sbjct 1771306 AGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 1771365 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1771366 ATTCCTTCCTTATCTTG 1771382 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||| | ||| | || |||||||| || || ||||| || Sbjct 1771702 CCTCCTCTCAATCGAAGTACAAGATGGAGTGTCGATTCTTTCTGGATGTTGTAATCAGAG 1771761 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || ||| Sbjct 1771762 AGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 1771821 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1771822 ATTCCTTCCTTATCTTG 1771838 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||| | ||| | || |||||||| || || ||||| || Sbjct 1771930 CCTCCTCTCAATCGAAGTACAAGATGGAGTGTCGATTCTTTCTGGATGTTGTAATCAGAG 1771989 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| |||| |||||| |||||||| || | | ||||||||| || ||| Sbjct 1771990 AGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGA 1772049 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1772050 ATTCCTTCCTTATCTTG 1772066 >seq2241 Length=6263672 Score = 102 bits (112), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| |||||||||||||||| || ||| ||||||||||| ||||| |||||||| | | Sbjct 1926948 ATATTGTAATCTGAAAGAGTTCGGCCATCTTCTAATTGTTTACCAGCGAAAATCAAACGT 1926889 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 |||||||| |||||||| ||| Sbjct 1926888 TGCTGATCTGGAGGAATGCCT 1926868 >seq3602 Length=1370612 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24000 AATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTG 24059 || ||| ||| |||||||| || ||| || |||| | ||||||||| || || Sbjct 174434 AACAAACGCTTCTCCTTTTACTTGTAGAACGTAGGGACATCTGGAAAACCATCTAGCATG 174375 Query 24060 TTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCA 24119 || | |||| |||||||| | | |||||| | |||| ||||||||||||| |||||| Sbjct 174374 TTCTTTCCATGGATCATCATTAGCTTCCCAAGTTCTTAATCCACCATCACAATGAAAGCA 174315 Query 24120 TTTAAC 24125 |||||| Sbjct 174314 TTTAAC 174309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743484864756480