Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2153 104 2e-17 >seq2153 Length=2898250 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 ||||| || || || || | |||||||| || || |||||||| ||||| || ||||| Sbjct 642123 TTATCACAGCCTAAGTCGACTAATAATCTGTCAGCTACAAATTCAATATATTGCTTCATG 642182 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | |||||||||||| || ||||||||| || | || || |||||||| | || ||| Sbjct 642183 AGATCACAGTTCATACCAATTAATTTACATGGTAAAGCATCAGTTAAAAATTCTTGTTCA 642242 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACG-GAGGG----TTTA 16214 || | || || ||| | |||||| | || | | ||| | || | |||| Sbjct 642243 ATTTGTACTGCATCAGTAATTATACC-----ATAAATTCTTTCCTGTGATAGCTTATTTA 642297 Query 16215 ATAAGTGTTTAAACATTATACAAGCAAAATCACAATG 16251 ||| ||| | |||||| ||| |||||||||||||| Sbjct 642298 CTAAATGTCTGTACATTAAACAGGCAAAATCACAATG 642334 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| ||||||| || || || || | ||||||||||| ||||||||||||| Sbjct 642639 AAGGTTAAACCAGGCATTATACCACGCTTCTTCAACCAAAATATAGAGGCAAATGAACCA 642698 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || ||||| || |||||||| || ||||| ||||| | || || || | | | Sbjct 642699 GAGAAGAAAATTCCTTCAACGGCAGCAAAAGCAACAACTCTTTCTGAATAGTCTGCCTCT 642758 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTC 16464 | | | ||||||||| |||||| | ||| || | ||| ||||| | | ||||| || Sbjct 642759 TCATCACCAATCCATTTTAGAGCCCAGTCTGCCTTCTTTTTTACACAGGGTAATGTT-TC 642817 Query 16465 TATTGCATTAAATAAATA 16482 || ||||| ||||| || Sbjct 642818 AATAGCATTGAATAAGTA 642835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 |||||| ||| |||| |||||||||||| |||||||| ||||| || || | ||| || Sbjct 641741 TGACATCACTCCCATTCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCC 641800 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| | || || |||||||||||||||||| |||| Sbjct 641801 TTCAAGGGATATTAATTCCATAAAATCAAAAGGGTTTT 641838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 16478 AAATAAttttttt--CTTTGCT----ATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 |||||| ||| || ||||| | |||| ||||| |||||||||| ||| || ||| Sbjct 643150 AAATAAGTTTATTACCTTTGTTTAGGATCTTTGATATAGGTATCTATTAATAAGCTGTAC 643209 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 || || || ||||||||||| || | ||||||||||| || ||||| ||||| | | Sbjct 643210 ATCTCACTGTGGATATTCTCCATGGCAACTTGAAAACCATAGAAACATCTTGCTTCTGTT 643269 Query 16592 ATTTGTACTTC 16602 || ||||| || Sbjct 643270 ATCTGTACCTC 643280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462486162923400