Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2153 111 2e-19 >seq2153 Length=2898250 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 ||||||||||||| || ||||||||||| || ||||| || |||| | | | ||| | Sbjct 643482 CCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGA 643541 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14708 ||| ||| |||||| | | || ||||| |||||| ||||| | || |||| Sbjct 643542 AGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 14709 CATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14768 | ||| | |||||||| || |||||||||| |||||| ||| || || | |||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 14769 ATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGAATTGGTTC 14817 ||||| || | ||||||||| || ||| ||||| | | | |||||| Sbjct 643662 GAATAGGGAATATTACAAATCTATGGGGAT-TTTCTCTCAATAATGGTTC 643710 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| |||| ||| || ||||| || || ||||| || ||||| | || || || | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||||||||| | || ||||| || || ||||| ||||| ||||| |||||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | || |||| | | ||| | || | ||||||||| |||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 || ||||| | | | | ||||||||||||||| ||||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAA 642832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| |||||||||||| ||||| || ||||| ||||||| ||| ||| Sbjct 641742 GACATCACTCCCATTCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCT 641801 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 || || ||||| ||||||||||||||| || ||| Sbjct 641802 TCAAGGGATATTAATTCCATAAAATCAAAAGGGTTT 641837 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || |||||||| |||| || | || |||||| || || | || ||||||||||| | Sbjct 642120 ACCTTATCACAGCCTAAGTCGACTAATAATCTGTCAGCTACAAATTCAATATATTGCTTC 642179 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACA-GGAATTATATTGGTTAAAAATTCTTT 14124 || | |||||| |||||||| |||| |||||| || | || ||||||||||||| Sbjct 642180 ATGAGATCACAGTTCATACCAATTA-ATTTACATGGTAAAGCATCAGTTAAAAATTCTTG 642238 Query 14125 TTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTT 14184 ||| || || || || | || ||| ||| |||| | || || ||||| Sbjct 642239 TTCAATTTGTACTGCATCAGTAATTATACCATAAATTCTTTCCTGTGA--TAGCTTATTT 642296 Query 14185 --TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 || |||| | | |||||||| |||||||||||||| || |||| Sbjct 642297 ACTAAATGTCTGTACATTAAACAGGCAAAATCACAATGTAGACCCT 642342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482318654968920